miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 6520 0.66 0.806979
Target:  5'- ---aACGCCGCCCaacaugaGuuucuuuaccaacuuGCGGCGCGUCa -3'
miRNA:   3'- ccugUGUGGUGGGag-----C---------------UGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 1722 0.66 0.803505
Target:  5'- cGGGUGCgaaCGCUCUCGaACGGCGUGUg -3'
miRNA:   3'- -CCUGUGug-GUGGGAGC-UGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 44299 0.66 0.803505
Target:  5'- -uGCACACCauGCCCUCG-UGGUG-GUUg -3'
miRNA:   3'- ccUGUGUGG--UGGGAGCuGCCGCgCAG- -5'
6751 5' -58.8 NC_001875.2 + 5930 0.66 0.803505
Target:  5'- uGGguaGCGCCGCgCagGugGGCGCGg- -3'
miRNA:   3'- -CCug-UGUGGUGgGagCugCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 125636 0.66 0.803505
Target:  5'- cGGACGCAauugCGCgCUUUGAaaCGGCGCG-Cg -3'
miRNA:   3'- -CCUGUGUg---GUG-GGAGCU--GCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 62488 0.66 0.803505
Target:  5'- cGGGCGCA-CGCCgCU-GACuGCGCGUUu -3'
miRNA:   3'- -CCUGUGUgGUGG-GAgCUGcCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 21151 0.66 0.803505
Target:  5'- -aACGCGgCGCCCUCcGCGGcCGCuUCu -3'
miRNA:   3'- ccUGUGUgGUGGGAGcUGCC-GCGcAG- -5'
6751 5' -58.8 NC_001875.2 + 79510 0.66 0.803505
Target:  5'- aGGCGCGCCGaaaaCUUGACguuGGCGUGUa -3'
miRNA:   3'- cCUGUGUGGUgg--GAGCUG---CCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 95355 0.66 0.803505
Target:  5'- cGGCGCACgugCACgCgUCGGCGGaaaacgGCGUCg -3'
miRNA:   3'- cCUGUGUG---GUG-GgAGCUGCCg-----CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 5530 0.66 0.794717
Target:  5'- -uACGCcgGCCGCCgUUGAgGcGCGCGUUa -3'
miRNA:   3'- ccUGUG--UGGUGGgAGCUgC-CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 100684 0.66 0.794717
Target:  5'- -aGCACACUGUCCgacuccgCGcGCGGCGCGUUa -3'
miRNA:   3'- ccUGUGUGGUGGGa------GC-UGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 111541 0.66 0.794717
Target:  5'- uGGACcaGCACCACCaguUCccCGGCGUGg- -3'
miRNA:   3'- -CCUG--UGUGGUGGg--AGcuGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 26618 0.66 0.785788
Target:  5'- uGACAgGCCGCCCaagcaugaCGAgGGCGCc-- -3'
miRNA:   3'- cCUGUgUGGUGGGa-------GCUgCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 128805 0.66 0.785788
Target:  5'- -uACGCGCUGCCCa--ACGGCGUGUa -3'
miRNA:   3'- ccUGUGUGGUGGGagcUGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 10440 0.66 0.785788
Target:  5'- uGGCGCAgCAgCUUUGacGCGGCGCGg- -3'
miRNA:   3'- cCUGUGUgGUgGGAGC--UGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 94240 0.66 0.785788
Target:  5'- -aGCACGCCGCCgUgCGGcCGGcCGCGg- -3'
miRNA:   3'- ccUGUGUGGUGGgA-GCU-GCC-GCGCag -5'
6751 5' -58.8 NC_001875.2 + 42559 0.66 0.784888
Target:  5'- uGGuCGCGCCcagccgcGCCaggUCGGCGcacgcGCGCGUCa -3'
miRNA:   3'- -CCuGUGUGG-------UGGg--AGCUGC-----CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 91426 0.66 0.783986
Target:  5'- uGGGC-CGCaGCUCgcuguagcugagCGGCGGCGCGUg -3'
miRNA:   3'- -CCUGuGUGgUGGGa-----------GCUGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 83573 0.66 0.776727
Target:  5'- cGGACACAUgAggugUCC-CGGCGGgGCGcCg -3'
miRNA:   3'- -CCUGUGUGgU----GGGaGCUGCCgCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 78343 0.66 0.776727
Target:  5'- -cGCGCACCGagUCCUUGA--GCGCGUCc -3'
miRNA:   3'- ccUGUGUGGU--GGGAGCUgcCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.