Results 1 - 20 of 139 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 69238 | 0.66 | 0.88656 |
Target: 5'- aCGGCGGCGuCGAa--CGGCGcgcugGGCCGc -3' miRNA: 3'- -GCCGCCGUuGUUggaGUUGCa----CCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 41999 | 0.66 | 0.88656 |
Target: 5'- aCGGCGGUGAaAAaaUCGGCG-GGCCc -3' miRNA: 3'- -GCCGCCGUUgUUggAGUUGCaCCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 4426 | 0.66 | 0.88656 |
Target: 5'- aCGGCGGCAugcugACGcgcGCCgcCAGCacuuUGGCCa -3' miRNA: 3'- -GCCGCCGU-----UGU---UGGa-GUUGc---ACCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 97025 | 0.66 | 0.88656 |
Target: 5'- aCGGCGGCAGCGuCgUaAACGcuuGCCGg -3' miRNA: 3'- -GCCGCCGUUGUuGgAgUUGCac-CGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 110002 | 0.66 | 0.88656 |
Target: 5'- uCGGUGGCGuugacgcgcgcGCAG-CUCGACcaGUGGCgCGa -3' miRNA: 3'- -GCCGCCGU-----------UGUUgGAGUUG--CACCG-GC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 55350 | 0.66 | 0.88656 |
Target: 5'- uCGGgGGC-GCcGCCUCGucguCGUccgcGGCCGu -3' miRNA: 3'- -GCCgCCGuUGuUGGAGUu---GCA----CCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 7086 | 0.66 | 0.88656 |
Target: 5'- gGGCGGCAGCuACUaCGuGCGcGGCuCGg -3' miRNA: 3'- gCCGCCGUUGuUGGaGU-UGCaCCG-GC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 82073 | 0.66 | 0.879566 |
Target: 5'- cCGGgGGCuuuGCGGCCUaCAuacugGGCCGc -3' miRNA: 3'- -GCCgCCGu--UGUUGGA-GUugca-CCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 77347 | 0.66 | 0.879566 |
Target: 5'- uGGCgcacGGCGACAACaaggUCAgccagguguACGUGGCgGa -3' miRNA: 3'- gCCG----CCGUUGUUGg---AGU---------UGCACCGgC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 48258 | 0.66 | 0.879566 |
Target: 5'- aCGGCGGCGccccgccgggAC-ACCUC-AUGUGuccGCCGc -3' miRNA: 3'- -GCCGCCGU----------UGuUGGAGuUGCAC---CGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 70196 | 0.66 | 0.878854 |
Target: 5'- gGGCGGCGACGgcgaccacugggcGCCcgaGGCGccGCCGa -3' miRNA: 3'- gCCGCCGUUGU-------------UGGag-UUGCacCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 15725 | 0.66 | 0.872351 |
Target: 5'- aGGUGuGCGAgGACCcCAACGcGGUCu -3' miRNA: 3'- gCCGC-CGUUgUUGGaGUUGCaCCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 121461 | 0.66 | 0.872351 |
Target: 5'- gCGGCGGCGuuCAAaguUUUCGGCcaGGCCGu -3' miRNA: 3'- -GCCGCCGUu-GUU---GGAGUUGcaCCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 32567 | 0.66 | 0.872351 |
Target: 5'- gCGGCuGCAGCAgugccgcgcgcACCUCGACua-GCCGu -3' miRNA: 3'- -GCCGcCGUUGU-----------UGGAGUUGcacCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 39639 | 0.66 | 0.872351 |
Target: 5'- uGGCGcGCAGCgAACCgcgcGCGaguuugGGCCGg -3' miRNA: 3'- gCCGC-CGUUG-UUGGagu-UGCa-----CCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 110489 | 0.66 | 0.872351 |
Target: 5'- uGGCGGCccaucuguucaAGCAcgucGCC-CAG-GUGGCCGc -3' miRNA: 3'- gCCGCCG-----------UUGU----UGGaGUUgCACCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 120050 | 0.66 | 0.872351 |
Target: 5'- gCGGcCGGCAACAacuACCUgAACa-GGCUa -3' miRNA: 3'- -GCC-GCCGUUGU---UGGAgUUGcaCCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 114477 | 0.66 | 0.864921 |
Target: 5'- uGGCGGUAgagaugugcgGCAGCaCUCuGACGcGGUCGc -3' miRNA: 3'- gCCGCCGU----------UGUUG-GAG-UUGCaCCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 15920 | 0.66 | 0.857279 |
Target: 5'- cCGGCaccGGCAACAugACC-CAGC-UGGCgGg -3' miRNA: 3'- -GCCG---CCGUUGU--UGGaGUUGcACCGgC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 80909 | 0.66 | 0.857279 |
Target: 5'- gCGaGCGGCGccugaaaaaccACAGCCUCGgcauagacuacgACG-GGCCc -3' miRNA: 3'- -GC-CGCCGU-----------UGUUGGAGU------------UGCaCCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home