Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6753 | 3' | -55 | NC_001875.2 | + | 37640 | 0.65 | 0.935288 |
Target: 5'- gGCuCGGCaAGACGCUGUCCGucauGCg---- -3' miRNA: 3'- -CG-GCCGcUUUGCGGCAGGC----CGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 46162 | 0.65 | 0.935288 |
Target: 5'- aGCUGGuCGAGuCGCUGcaggCCGGCg---- -3' miRNA: 3'- -CGGCC-GCUUuGCGGCa---GGCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 39668 | 0.65 | 0.935288 |
Target: 5'- gGCCGGCGgcGCGCgG--CGGCg---- -3' miRNA: 3'- -CGGCCGCuuUGCGgCagGCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 7449 | 0.66 | 0.930189 |
Target: 5'- cGCCGGCGAuuGCGgCGguguaCGGCc---- -3' miRNA: 3'- -CGGCCGCUu-UGCgGCag---GCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 109845 | 0.66 | 0.930189 |
Target: 5'- uGCCGGCGGAuuugcuGCGCgCGUuugccaagCUGGCg---- -3' miRNA: 3'- -CGGCCGCUU------UGCG-GCA--------GGCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 18109 | 0.66 | 0.930189 |
Target: 5'- cGCUGGUGGGAguCGCUcaUCGGCUUUg- -3' miRNA: 3'- -CGGCCGCUUU--GCGGcaGGCCGAAAac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 75596 | 0.66 | 0.924848 |
Target: 5'- cGUCGGCGAuGGCGUCGgcgUUGGCgucggcgUUGg -3' miRNA: 3'- -CGGCCGCU-UUGCGGCa--GGCCGaa-----AAC- -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 49640 | 0.66 | 0.924848 |
Target: 5'- -gCGGCGAcacgAGCgGCCG-CCGGCg---- -3' miRNA: 3'- cgGCCGCU----UUG-CGGCaGGCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 126326 | 0.66 | 0.924848 |
Target: 5'- gGCCGGCGuaaacuGCGCgCGUgcgCCGGUc---- -3' miRNA: 3'- -CGGCCGCuu----UGCG-GCA---GGCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 76869 | 0.66 | 0.924848 |
Target: 5'- cGCCcagcGCGAgcGACG-CGUCCGGCa---- -3' miRNA: 3'- -CGGc---CGCU--UUGCgGCAGGCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 81339 | 0.66 | 0.924848 |
Target: 5'- uGCCGcGCGgcGCGCUGgugCCGcGCg---- -3' miRNA: 3'- -CGGC-CGCuuUGCGGCa--GGC-CGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 57580 | 0.66 | 0.919262 |
Target: 5'- gGCgCGGCGucGCGCUGUCCagaaGCg--UGg -3' miRNA: 3'- -CG-GCCGCuuUGCGGCAGGc---CGaaaAC- -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 99052 | 0.66 | 0.919262 |
Target: 5'- uGCCGGCGcgGCGCCcgcccacgCCGcGCg---- -3' miRNA: 3'- -CGGCCGCuuUGCGGca------GGC-CGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 41806 | 0.66 | 0.913434 |
Target: 5'- cGCCGGC---ACGCgCG-CCGGCg---- -3' miRNA: 3'- -CGGCCGcuuUGCG-GCaGGCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 33037 | 0.66 | 0.913434 |
Target: 5'- aGCgCGGCG-GGCGCCGcgCCGcGCg---- -3' miRNA: 3'- -CG-GCCGCuUUGCGGCa-GGC-CGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 80594 | 0.66 | 0.913434 |
Target: 5'- uGCUGGCGGaaagaAugGUCGUCaCGGUg---- -3' miRNA: 3'- -CGGCCGCU-----UugCGGCAG-GCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 38302 | 0.66 | 0.913434 |
Target: 5'- cGgUGGCG-AGCGCCGacaaggCCGGCg---- -3' miRNA: 3'- -CgGCCGCuUUGCGGCa-----GGCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 18246 | 0.66 | 0.913434 |
Target: 5'- cGCCGcCGAcucgAACGCCGUgCUGGCc---- -3' miRNA: 3'- -CGGCcGCU----UUGCGGCA-GGCCGaaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 108580 | 0.66 | 0.907363 |
Target: 5'- uGCUGGCGcuGCGCUGcCCGucGCUg--- -3' miRNA: 3'- -CGGCCGCuuUGCGGCaGGC--CGAaaac -5' |
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6753 | 3' | -55 | NC_001875.2 | + | 81436 | 0.66 | 0.907363 |
Target: 5'- aGCUGGcCGucuGCGCCGUCCG-Ca---- -3' miRNA: 3'- -CGGCC-GCuu-UGCGGCAGGCcGaaaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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