miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 90012 0.66 0.958202
Target:  5'- cGGCAACu-GGAcgcgcaacUGGCCG-CGG-CGCCg -3'
miRNA:   3'- -CCGUUGuuUCU--------ACCGGCcGCUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 65654 0.66 0.958202
Target:  5'- aGCAACAAAaacagGGCCacaaacGCGACCAgCCc -3'
miRNA:   3'- cCGUUGUUUcua--CCGGc-----CGCUGGU-GG- -5'
6753 5' -53.9 NC_001875.2 + 47763 0.66 0.958202
Target:  5'- aGCAuuGAAGA-GGCgGGCGAa-ACCa -3'
miRNA:   3'- cCGUugUUUCUaCCGgCCGCUggUGG- -5'
6753 5' -53.9 NC_001875.2 + 64554 0.66 0.958202
Target:  5'- -aCGGCuuGGugcUGGCCGGCGACUc-- -3'
miRNA:   3'- ccGUUGuuUCu--ACCGGCCGCUGGugg -5'
6753 5' -53.9 NC_001875.2 + 73540 0.66 0.958202
Target:  5'- cGCGcCAAAGAugcagUGGuuGGuCGACCGUCg -3'
miRNA:   3'- cCGUuGUUUCU-----ACCggCC-GCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 89270 0.66 0.957825
Target:  5'- cGCGcguGCGccGAccUGGCgCGGCugggcgcGACCACCg -3'
miRNA:   3'- cCGU---UGUuuCU--ACCG-GCCG-------CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 129079 0.66 0.957065
Target:  5'- gGGCAugaACAAcGAguaccgcaucagccUGGCCaaaaaaggcGGCGGCUGCCc -3'
miRNA:   3'- -CCGU---UGUUuCU--------------ACCGG---------CCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 36102 0.66 0.954329
Target:  5'- cGGCAGCAcgcGgcGG-CGGCG-CCGCUc -3'
miRNA:   3'- -CCGUUGUuu-CuaCCgGCCGCuGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 8792 0.66 0.954329
Target:  5'- uGGCAAacaagcugccCAGAGAaucggguugGGCaGGCGGCgCGCCc -3'
miRNA:   3'- -CCGUU----------GUUUCUa--------CCGgCCGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 27284 0.66 0.954329
Target:  5'- uGGUuuUAGuuGGGUGGUCGcCGGCCAUCu -3'
miRNA:   3'- -CCGuuGUU--UCUACCGGCcGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 11888 0.66 0.954329
Target:  5'- cGGCGACGGAGG-GGUCGuCGACaaugaGCa -3'
miRNA:   3'- -CCGUUGUUUCUaCCGGCcGCUGg----UGg -5'
6753 5' -53.9 NC_001875.2 + 129526 0.66 0.954329
Target:  5'- uGCAgGCcGAGcUGGCCGagcugcgcGCGGCCACg -3'
miRNA:   3'- cCGU-UGuUUCuACCGGC--------CGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 43972 0.66 0.954329
Target:  5'- -uCAACAc--AUGGUCGcCGACCGCCa -3'
miRNA:   3'- ccGUUGUuucUACCGGCcGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 39126 0.66 0.954329
Target:  5'- uGGCGGCGAcGAcccUGaCCGGCGAUgaugGCCa -3'
miRNA:   3'- -CCGUUGUUuCU---ACcGGCCGCUGg---UGG- -5'
6753 5' -53.9 NC_001875.2 + 74104 0.66 0.954329
Target:  5'- gGGCAGCGAcGccGuGCUGGCGcguguUCGCCu -3'
miRNA:   3'- -CCGUUGUUuCuaC-CGGCCGCu----GGUGG- -5'
6753 5' -53.9 NC_001875.2 + 7438 0.66 0.954329
Target:  5'- gGGCAACugcgc--GCCGGCGAUUGCg -3'
miRNA:   3'- -CCGUUGuuucuacCGGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 11983 0.66 0.954329
Target:  5'- uGGCGACGGcguugggcgcGGGUGuGgUGGCGAgCGCg -3'
miRNA:   3'- -CCGUUGUU----------UCUAC-CgGCCGCUgGUGg -5'
6753 5' -53.9 NC_001875.2 + 50349 0.66 0.954329
Target:  5'- cGGCGuCGuuGGcgucgGGCCGcGCGcGCCACUg -3'
miRNA:   3'- -CCGUuGUuuCUa----CCGGC-CGC-UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 77168 0.66 0.953929
Target:  5'- cGGCAACuuuuacUGGCCcgacaacGGCGACgGCg -3'
miRNA:   3'- -CCGUUGuuucu-ACCGG-------CCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 29399 0.66 0.953121
Target:  5'- gGGCGGCAAGGGcgccaacccggcgcUcGGCaaCGGCGAgCGCg -3'
miRNA:   3'- -CCGUUGUUUCU--------------A-CCG--GCCGCUgGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.