miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 68709 0.66 0.675087
Target:  5'- cGUGCGccGGCcGCGCGCc-CGGCcGCu -3'
miRNA:   3'- -CACGUucCCGcUGCGCGucGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 40461 0.66 0.675087
Target:  5'- -aGCcccGAGGGCGugGUGguGCcgGGCg-- -3'
miRNA:   3'- caCG---UUCCCGCugCGCguCG--CCGacg -5'
6762 3' -60.5 NC_001875.2 + 30430 0.66 0.675087
Target:  5'- cGUGCAGcaaaGCGuccaACGCGCAGCuGGC-GCg -3'
miRNA:   3'- -CACGUUcc--CGC----UGCGCGUCG-CCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 83809 0.66 0.675087
Target:  5'- cGUGCcuguGGGCGGCG-GCcacGUGGCcGCc -3'
miRNA:   3'- -CACGuu--CCCGCUGCgCGu--CGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 115072 0.66 0.675087
Target:  5'- -aGCuuuacGCGGCGCGCAGUcacgacgccgGGCUGUc -3'
miRNA:   3'- caCGuucc-CGCUGCGCGUCG----------CCGACG- -5'
6762 3' -60.5 NC_001875.2 + 111478 0.66 0.675087
Target:  5'- cGUGaaaGAGcuGCugGACGCGgAGCGGCUGg -3'
miRNA:   3'- -CACg--UUCc-CG--CUGCGCgUCGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 21961 0.66 0.675087
Target:  5'- -cGCGGggauGGGCGGCGC-CAGCGccaGCUugGCa -3'
miRNA:   3'- caCGUU----CCCGCUGCGcGUCGC---CGA--CG- -5'
6762 3' -60.5 NC_001875.2 + 17840 0.66 0.675087
Target:  5'- -cGCGAGGGCgccgaaaacGAgGUGCAGuCGGCc-- -3'
miRNA:   3'- caCGUUCCCG---------CUgCGCGUC-GCCGacg -5'
6762 3' -60.5 NC_001875.2 + 74805 0.66 0.675087
Target:  5'- -aGCugGAGuaCGACGCGCccAGCGGC-GCg -3'
miRNA:   3'- caCG--UUCccGCUGCGCG--UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 65083 0.66 0.674081
Target:  5'- -cGCu-GGGCaagGACGCGCucaacgaGGCGGCcaaGCa -3'
miRNA:   3'- caCGuuCCCG---CUGCGCG-------UCGCCGa--CG- -5'
6762 3' -60.5 NC_001875.2 + 3334 0.66 0.672069
Target:  5'- -aGCGGgacGGGCGccucguguccggucACGCGCAugagauaacgcGCGGCUGa -3'
miRNA:   3'- caCGUU---CCCGC--------------UGCGCGU-----------CGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 52200 0.66 0.669049
Target:  5'- uUGCu-GGGCGACuGCGCGccgugcaaacuggacGCGcGaCUGCg -3'
miRNA:   3'- cACGuuCCCGCUG-CGCGU---------------CGC-C-GACG- -5'
6762 3' -60.5 NC_001875.2 + 127240 0.66 0.665017
Target:  5'- cGUGUuuGAGcGCGGCcucuucguGCGCAugucgggcauGCGGCUGCu -3'
miRNA:   3'- -CACG--UUCcCGCUG--------CGCGU----------CGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 3095 0.66 0.665017
Target:  5'- cGUGCAcgcgccGGGGCGcggcucGCgGCGCAGaccugGGCgGCg -3'
miRNA:   3'- -CACGU------UCCCGC------UG-CGCGUCg----CCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 111799 0.66 0.665017
Target:  5'- gGUGCAcGcGGcCGACgGCGCc-UGGCUGCu -3'
miRNA:   3'- -CACGUuC-CC-GCUG-CGCGucGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 100863 0.66 0.654922
Target:  5'- uUGCuuuuuGAGcGCGAgGCGCAGCGcGC-GCg -3'
miRNA:   3'- cACG-----UUCcCGCUgCGCGUCGC-CGaCG- -5'
6762 3' -60.5 NC_001875.2 + 79860 0.66 0.654922
Target:  5'- aUGUuGGGGUGGCGCGUGguccacgcGCGcGCgUGCg -3'
miRNA:   3'- cACGuUCCCGCUGCGCGU--------CGC-CG-ACG- -5'
6762 3' -60.5 NC_001875.2 + 24280 0.66 0.654922
Target:  5'- uGUGCGAcGGCGcCGCGCuuguccauagGGCGGauaUGUu -3'
miRNA:   3'- -CACGUUcCCGCuGCGCG----------UCGCCg--ACG- -5'
6762 3' -60.5 NC_001875.2 + 114659 0.66 0.654922
Target:  5'- uGUGCuauuuuuGGCGGUGCGuCAGCGGCgaccgUGCu -3'
miRNA:   3'- -CACGuuc----CCGCUGCGC-GUCGCCG-----ACG- -5'
6762 3' -60.5 NC_001875.2 + 12517 0.66 0.654922
Target:  5'- -aGCGccuGGGGCG-CaGUGCGGgGGUUGUu -3'
miRNA:   3'- caCGU---UCCCGCuG-CGCGUCgCCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.