miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6767 3' -52.3 NC_001875.2 + 104669 0.65 0.977834
Target:  5'- gGCGUugagcucgcccuugGCCA-UGUCGGCAAuguCGcuaAGGCu -3'
miRNA:   3'- aCGCG--------------CGGUaACAGCCGUUu--GC---UUCG- -5'
6767 3' -52.3 NC_001875.2 + 16208 0.65 0.977589
Target:  5'- cGUGCgGCCcgUGUUugagucgGGCGagugugacugcggcGACGAGGCc -3'
miRNA:   3'- aCGCG-CGGuaACAG-------CCGU--------------UUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 111840 0.66 0.977093
Target:  5'- cUGCGCgagccgGCCAggUGUCuGGCcAcgcacgucagcaacgGCGAGGCg -3'
miRNA:   3'- -ACGCG------CGGUa-ACAG-CCGuU---------------UGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 88249 0.66 0.976078
Target:  5'- cGCGCGCCGccGcugccgccguacUCGuCAGACGAAGa -3'
miRNA:   3'- aCGCGCGGUaaC------------AGCcGUUUGCUUCg -5'
6767 3' -52.3 NC_001875.2 + 33499 0.66 0.976078
Target:  5'- gGUGCGCCAaccgaUUGUacacgcagcgCGGCuuGCcGGGCg -3'
miRNA:   3'- aCGCGCGGU-----AACA----------GCCGuuUGcUUCG- -5'
6767 3' -52.3 NC_001875.2 + 125245 0.66 0.976078
Target:  5'- gGCGCgGUCAUUGagGGUAcGCGGcuGCu -3'
miRNA:   3'- aCGCG-CGGUAACagCCGUuUGCUu-CG- -5'
6767 3' -52.3 NC_001875.2 + 114657 0.66 0.976078
Target:  5'- cGUGUGCUAUUuUUGGCGGuGCGucAGCg -3'
miRNA:   3'- aCGCGCGGUAAcAGCCGUU-UGCu-UCG- -5'
6767 3' -52.3 NC_001875.2 + 102805 0.66 0.976078
Target:  5'- aGCGCGUCGUUuagcccGUCGccgccGCAaaucggGAUGAAGCc -3'
miRNA:   3'- aCGCGCGGUAA------CAGC-----CGU------UUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 105158 0.66 0.976078
Target:  5'- cGCGCGgCGcgUGUUGG---GCGAAGUc -3'
miRNA:   3'- aCGCGCgGUa-ACAGCCguuUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 114723 0.66 0.976078
Target:  5'- cGUGUGCUAUUuUUGGCGGuGCGucAGCg -3'
miRNA:   3'- aCGCGCGGUAAcAGCCGUU-UGCu-UCG- -5'
6767 3' -52.3 NC_001875.2 + 41032 0.66 0.976078
Target:  5'- cGCGUgGCCGUgGaCGGCGuuuuuACGAgcGGCg -3'
miRNA:   3'- aCGCG-CGGUAaCaGCCGUu----UGCU--UCG- -5'
6767 3' -52.3 NC_001875.2 + 42456 0.66 0.976078
Target:  5'- aGCG-GCCGcUG-CGGCGAgccACGcAGCa -3'
miRNA:   3'- aCGCgCGGUaACaGCCGUU---UGCuUCG- -5'
6767 3' -52.3 NC_001875.2 + 94167 0.66 0.975558
Target:  5'- gUGCGCGUCAUcgccgucGUUGGCuaucaggcgcauGACGGacAGCg -3'
miRNA:   3'- -ACGCGCGGUAa------CAGCCGu-----------UUGCU--UCG- -5'
6767 3' -52.3 NC_001875.2 + 43611 0.66 0.974493
Target:  5'- cGCGCGCCGcUUG-CGccguuuuugcccaauGaCGGACGAGGUg -3'
miRNA:   3'- aCGCGCGGU-AACaGC---------------C-GUUUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 121546 0.66 0.973115
Target:  5'- aGCGCGUa---GUCGGCAAAggccuCGAccaccacGGCg -3'
miRNA:   3'- aCGCGCGguaaCAGCCGUUU-----GCU-------UCG- -5'
6767 3' -52.3 NC_001875.2 + 53007 0.66 0.973115
Target:  5'- uUGCG-GCCAgccUGUCGGUgcccacggacuacGGGCGcaAAGCg -3'
miRNA:   3'- -ACGCgCGGUa--ACAGCCG-------------UUUGC--UUCG- -5'
6767 3' -52.3 NC_001875.2 + 442 0.66 0.9705
Target:  5'- aGCGUGCCGUcGUgcacCGGCGAGUGuucGCg -3'
miRNA:   3'- aCGCGCGGUAaCA----GCCGUUUGCuu-CG- -5'
6767 3' -52.3 NC_001875.2 + 66111 0.66 0.9705
Target:  5'- cGCGCGgCGgg--CGGCGAgGCGgcGCc -3'
miRNA:   3'- aCGCGCgGUaacaGCCGUU-UGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 116904 0.66 0.9705
Target:  5'- cUGCGCuaGCCGcgcgCGGCGggUGgcGCa -3'
miRNA:   3'- -ACGCG--CGGUaacaGCCGUuuGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 97998 0.66 0.9705
Target:  5'- gGUGCGCgAcgUGUUGuuuGACGAGGCg -3'
miRNA:   3'- aCGCGCGgUa-ACAGCcguUUGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.