miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6768 3' -57.7 NC_001875.2 + 46476 0.66 0.839829
Target:  5'- gCGuUUGCCaacgcgaaCGCCGCCACGgcgucggcguucgcgGCGGGc- -3'
miRNA:   3'- gGC-AACGG--------GCGGCGGUGCa--------------UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 59306 0.66 0.839016
Target:  5'- cCCGUUGUuuaauuCCGuuGCCAUGgacACGGuGAg -3'
miRNA:   3'- -GGCAACG------GGCggCGGUGCa--UGCCuUU- -5'
6768 3' -57.7 NC_001875.2 + 33801 0.66 0.839016
Target:  5'- gCGcacUUGCCCGUCgGCgCACGgcgcGCGGggGa -3'
miRNA:   3'- gGC---AACGGGCGG-CG-GUGCa---UGCCuuU- -5'
6768 3' -57.7 NC_001875.2 + 78417 0.66 0.839016
Target:  5'- aCGgaGCCCGaaaaCCG-CACGUGCGGcAAAa -3'
miRNA:   3'- gGCaaCGGGC----GGCgGUGCAUGCC-UUU- -5'
6768 3' -57.7 NC_001875.2 + 111976 0.66 0.830786
Target:  5'- aCGgcGCCCG-CGCCGCGacGCGGc-- -3'
miRNA:   3'- gGCaaCGGGCgGCGGUGCa-UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 41843 0.66 0.830786
Target:  5'- uCCaGUUGCCgCGCCGCgGCG-GCGa--- -3'
miRNA:   3'- -GG-CAACGG-GCGGCGgUGCaUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 19969 0.66 0.830786
Target:  5'- gCCGgcGCCuCGCCGUUgcugACGUGCGuGGc- -3'
miRNA:   3'- -GGCaaCGG-GCGGCGG----UGCAUGC-CUuu -5'
6768 3' -57.7 NC_001875.2 + 77126 0.66 0.828282
Target:  5'- cCUGUccacGCCCGUCGCCAgGcaguacaaaugcuuUGCGGAc- -3'
miRNA:   3'- -GGCAa---CGGGCGGCGGUgC--------------AUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 12289 0.66 0.822378
Target:  5'- aCCGUgugcaGCCggcaCGCCGCCGUGUGCGuGGu- -3'
miRNA:   3'- -GGCAa----CGG----GCGGCGGUGCAUGC-CUuu -5'
6768 3' -57.7 NC_001875.2 + 2296 0.66 0.822378
Target:  5'- aCGccgGCCCGCCGUggaGCaUACGGAc- -3'
miRNA:   3'- gGCaa-CGGGCGGCGg--UGcAUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 63281 0.66 0.821527
Target:  5'- gCGgUGCgcgaccgCCGCCGCCGCG-GCGGcAAAc -3'
miRNA:   3'- gGCaACG-------GGCGGCGGUGCaUGCC-UUU- -5'
6768 3' -57.7 NC_001875.2 + 103458 0.66 0.813798
Target:  5'- gCGUcgUGCaCGCCGCgACGUACGa--- -3'
miRNA:   3'- gGCA--ACGgGCGGCGgUGCAUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 29770 0.66 0.813798
Target:  5'- aCUG-UGCUCGCC-CCAaaugauCGUGCGGGAc -3'
miRNA:   3'- -GGCaACGGGCGGcGGU------GCAUGCCUUu -5'
6768 3' -57.7 NC_001875.2 + 89706 0.66 0.796157
Target:  5'- aCCuUUGCCCGCCaGCUAaucACGGAc- -3'
miRNA:   3'- -GGcAACGGGCGG-CGGUgcaUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 118877 0.67 0.787112
Target:  5'- gCGgaGCCCacgcGCCGCCGCG-ACGaGAc- -3'
miRNA:   3'- gGCaaCGGG----CGGCGGUGCaUGC-CUuu -5'
6768 3' -57.7 NC_001875.2 + 31250 0.67 0.787112
Target:  5'- gCCGgcGCCCGgC-CCGCGUACGc--- -3'
miRNA:   3'- -GGCaaCGGGCgGcGGUGCAUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 102995 0.67 0.787112
Target:  5'- gCGacaagUGCCCGCCGUC-CGUGuCGGc-- -3'
miRNA:   3'- gGCa----ACGGGCGGCGGuGCAU-GCCuuu -5'
6768 3' -57.7 NC_001875.2 + 73024 0.67 0.784372
Target:  5'- gCCGUUGCCCGCCugguaguuguugucGaCUACGUucGCGucGAAAa -3'
miRNA:   3'- -GGCAACGGGCGG--------------C-GGUGCA--UGC--CUUU- -5'
6768 3' -57.7 NC_001875.2 + 23786 0.67 0.77793
Target:  5'- aCGUUGCCCagGUCGCCgACGUgucgcuccGCGGc-- -3'
miRNA:   3'- gGCAACGGG--CGGCGG-UGCA--------UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 1787 0.67 0.77793
Target:  5'- gCCGccGCcgCCGCCGCCAuuucCGUcgGCGGAu- -3'
miRNA:   3'- -GGCaaCG--GGCGGCGGU----GCA--UGCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.