miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6769 5' -64.4 NC_001875.2 + 57512 0.65 0.548081
Target:  5'- aACGCCCGGCGCCACaaACGUgUUguagcuagagcagCGGu -3'
miRNA:   3'- -UGCGGGCCGUGGUGg-UGCGgGA-------------GCCc -5'
6769 5' -64.4 NC_001875.2 + 121450 0.65 0.548081
Target:  5'- cGCGCCaCGGCGCgGCgGCGUUCaaaguuuUCGGc -3'
miRNA:   3'- -UGCGG-GCCGUGgUGgUGCGGG-------AGCCc -5'
6769 5' -64.4 NC_001875.2 + 42573 0.66 0.539595
Target:  5'- cGCGCCagguCGGCGCaCGCgCGCGUCagCUCGGc -3'
miRNA:   3'- -UGCGG----GCCGUG-GUG-GUGCGG--GAGCCc -5'
6769 5' -64.4 NC_001875.2 + 128728 0.66 0.539595
Target:  5'- cCGCCCaggucuGCGCgcgaGCCGCGCCC-CGGc -3'
miRNA:   3'- uGCGGGc-----CGUGg---UGGUGCGGGaGCCc -5'
6769 5' -64.4 NC_001875.2 + 43488 0.66 0.539595
Target:  5'- uUGCCCGuGCACgcugcaCACCuugACGCCCUCcaGGu -3'
miRNA:   3'- uGCGGGC-CGUG------GUGG---UGCGGGAGc-CC- -5'
6769 5' -64.4 NC_001875.2 + 100602 0.66 0.539595
Target:  5'- -gGCCgGGCGCCgGCCGCGgCcgcuguuugCCUCGuGGa -3'
miRNA:   3'- ugCGGgCCGUGG-UGGUGC-G---------GGAGC-CC- -5'
6769 5' -64.4 NC_001875.2 + 33632 0.66 0.539595
Target:  5'- cCGCCgGGCAguugcagccgcUCACCucgACGCCgUCGGcGg -3'
miRNA:   3'- uGCGGgCCGU-----------GGUGG---UGCGGgAGCC-C- -5'
6769 5' -64.4 NC_001875.2 + 42739 0.66 0.533963
Target:  5'- cGCGCgCGGCGacgcgcauggugaGCgGCGCgCUCGGGu -3'
miRNA:   3'- -UGCGgGCCGUgg-----------UGgUGCGgGAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 34077 0.66 0.53022
Target:  5'- uGCGCCaacaGCCA-CACGCCCgugcCGGGg -3'
miRNA:   3'- -UGCGGgccgUGGUgGUGCGGGa---GCCC- -5'
6769 5' -64.4 NC_001875.2 + 56253 0.66 0.53022
Target:  5'- gGCGCgCGGCugCAgUAcuuugcCGCCCUCGu- -3'
miRNA:   3'- -UGCGgGCCGugGUgGU------GCGGGAGCcc -5'
6769 5' -64.4 NC_001875.2 + 91867 0.66 0.53022
Target:  5'- -gGCCCccagGGCGCCugCugGUgCggcggCGGGu -3'
miRNA:   3'- ugCGGG----CCGUGGugGugCGgGa----GCCC- -5'
6769 5' -64.4 NC_001875.2 + 107888 0.66 0.524623
Target:  5'- cGCGCCCGacgagccggugaGCAUCACCGgcuaccuacucaacuUGCCUcgCGGGc -3'
miRNA:   3'- -UGCGGGC------------CGUGGUGGU---------------GCGGGa-GCCC- -5'
6769 5' -64.4 NC_001875.2 + 54750 0.66 0.520904
Target:  5'- gGCGCaccgCCGGCACCGCCAgCGCaaacaGGa -3'
miRNA:   3'- -UGCG----GGCCGUGGUGGU-GCGggag-CCc -5'
6769 5' -64.4 NC_001875.2 + 9958 0.66 0.520904
Target:  5'- cACG-CCGGCuuauaGCCACCACGCgUguacaGGGc -3'
miRNA:   3'- -UGCgGGCCG-----UGGUGGUGCGgGag---CCC- -5'
6769 5' -64.4 NC_001875.2 + 33568 0.66 0.520904
Target:  5'- uCGCCgCGGgG-CACCAUGCCCgagUCGGc -3'
miRNA:   3'- uGCGG-GCCgUgGUGGUGCGGG---AGCCc -5'
6769 5' -64.4 NC_001875.2 + 97199 0.66 0.520904
Target:  5'- uUGCCCacGGCggccuccaugauGCaCACCuuGUCCUCGGGc -3'
miRNA:   3'- uGCGGG--CCG------------UG-GUGGugCGGGAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 99056 0.66 0.519976
Target:  5'- -gGCgCGGCGCCcgcCCACGCCgcgcgaggacgcgCUCGaGGa -3'
miRNA:   3'- ugCGgGCCGUGGu--GGUGCGG-------------GAGC-CC- -5'
6769 5' -64.4 NC_001875.2 + 100085 0.66 0.519976
Target:  5'- cGCGCuuGGCACCuacuccgacuaucGCUACGCCaa-GGc -3'
miRNA:   3'- -UGCGggCCGUGG-------------UGGUGCGGgagCCc -5'
6769 5' -64.4 NC_001875.2 + 122065 0.66 0.511654
Target:  5'- gUGCCCGGauguGCCGCgUGCGCuuggCCUCGGa -3'
miRNA:   3'- uGCGGGCCg---UGGUG-GUGCG----GGAGCCc -5'
6769 5' -64.4 NC_001875.2 + 59287 0.66 0.511654
Target:  5'- cGCGCCCGcGC-CCGCaGCGCCCg---- -3'
miRNA:   3'- -UGCGGGC-CGuGGUGgUGCGGGagccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.