miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6771 5' -60.4 NC_001875.2 + 88078 0.66 0.720826
Target:  5'- aCGuc-UGCGcaaACGcCCGCGCAGCaGCCa -3'
miRNA:   3'- aGCcuuACGC---UGC-GGCGCGUCG-CGGc -5'
6771 5' -60.4 NC_001875.2 + 119667 0.66 0.720826
Target:  5'- cUCGGcg-GCGGCGCacaGCGGCuucaGCCGa -3'
miRNA:   3'- -AGCCuuaCGCUGCGgcgCGUCG----CGGC- -5'
6771 5' -60.4 NC_001875.2 + 131531 0.66 0.720826
Target:  5'- cUGGAA-GCGGCGCaaaGCGCGcccGUGuCCGu -3'
miRNA:   3'- aGCCUUaCGCUGCGg--CGCGU---CGC-GGC- -5'
6771 5' -60.4 NC_001875.2 + 38784 0.66 0.720826
Target:  5'- gCGGAGaGCG-CGCC-CGCaauucGGCGCUGc -3'
miRNA:   3'- aGCCUUaCGCuGCGGcGCG-----UCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 39183 0.66 0.720826
Target:  5'- gCGGu-UGCGugGCguuuaCGguGCGCCGc -3'
miRNA:   3'- aGCCuuACGCugCGgc---GCguCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 57578 0.66 0.720826
Target:  5'- cCGGc--GCGGCGUCGCGCuguccagaAGCGUgGu -3'
miRNA:   3'- aGCCuuaCGCUGCGGCGCG--------UCGCGgC- -5'
6771 5' -60.4 NC_001875.2 + 89384 0.66 0.720826
Target:  5'- -----cUGCGugGCuCGcCGCAGCgGCCGc -3'
miRNA:   3'- agccuuACGCugCG-GC-GCGUCG-CGGC- -5'
6771 5' -60.4 NC_001875.2 + 129966 0.66 0.720826
Target:  5'- gCGGcg-GCGGCGgCG-GCGGCGgCGg -3'
miRNA:   3'- aGCCuuaCGCUGCgGCgCGUCGCgGC- -5'
6771 5' -60.4 NC_001875.2 + 74367 0.66 0.720826
Target:  5'- aCGGcGUGCGcggccGCGgCGCGUucaGGCGCgGg -3'
miRNA:   3'- aGCCuUACGC-----UGCgGCGCG---UCGCGgC- -5'
6771 5' -60.4 NC_001875.2 + 5968 0.66 0.719859
Target:  5'- aCGuGAAUGUGGuCGCCgacggcaggcccaGCGC-GUGCCGa -3'
miRNA:   3'- aGC-CUUACGCU-GCGG-------------CGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 69164 0.66 0.715012
Target:  5'- aUCGcGAggcgcagcuaaucacGUGCauuaauCGCgUGCGCGGCGCCGa -3'
miRNA:   3'- -AGC-CU---------------UACGcu----GCG-GCGCGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 36424 0.66 0.711122
Target:  5'- cCGcGAGgccuuaccuuUGCGACGCCG-GC-GCGCUGc -3'
miRNA:   3'- aGC-CUU----------ACGCUGCGGCgCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 45742 0.66 0.711122
Target:  5'- ------cGCGAaGCCGUaaacGCGGCGCCGa -3'
miRNA:   3'- agccuuaCGCUgCGGCG----CGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 102922 0.66 0.711122
Target:  5'- gCGGAGgugGCGGaugaccgGCUGUGCaagauuugccucGGCGCCGa -3'
miRNA:   3'- aGCCUUa--CGCUg------CGGCGCG------------UCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 89131 0.66 0.711122
Target:  5'- cCGGGugcgccuUGCGuacgaaaccgcGCGCCGCGCGGUuucgugcacGCUGg -3'
miRNA:   3'- aGCCUu------ACGC-----------UGCGGCGCGUCG---------CGGC- -5'
6771 5' -60.4 NC_001875.2 + 58525 0.66 0.711122
Target:  5'- cCGGAccuGUGUcGCGUCGuCGCGGCGUUu -3'
miRNA:   3'- aGCCU---UACGcUGCGGC-GCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 20651 0.66 0.711122
Target:  5'- aCGGc--GCG-CGCCGCcCAGCGCg- -3'
miRNA:   3'- aGCCuuaCGCuGCGGCGcGUCGCGgc -5'
6771 5' -60.4 NC_001875.2 + 6809 0.66 0.711122
Target:  5'- aUCGGGucGCuGAaccaGCUGCGCcGCGUCGa -3'
miRNA:   3'- -AGCCUuaCG-CUg---CGGCGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 3655 0.66 0.711122
Target:  5'- cUGGcGUGUG-UGCUGCGCGcuugcGCGCCa -3'
miRNA:   3'- aGCCuUACGCuGCGGCGCGU-----CGCGGc -5'
6771 5' -60.4 NC_001875.2 + 62984 0.66 0.705268
Target:  5'- gUCGGGgcacucgcgcaccgcGUGCGACccguCCGCcagGCAGCGCa- -3'
miRNA:   3'- -AGCCU---------------UACGCUGc---GGCG---CGUCGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.