miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6772 5' -58.5 NC_001875.2 + 55509 0.65 0.796594
Target:  5'- gGUGGCGCagcaccugcucgauGGCGGCucggaaUGcGACGCGCAugaACa -3'
miRNA:   3'- -CGCCGCG--------------CCGUUG------AC-CUGCGCGU---UGa -5'
6772 5' -58.5 NC_001875.2 + 77191 0.66 0.790292
Target:  5'- aCGGCGaCGGCGuuCcGGACGaggcgugcCGCAACg -3'
miRNA:   3'- cGCCGC-GCCGUu-GaCCUGC--------GCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 13750 0.66 0.790292
Target:  5'- cGCGGCGuCGcGCAcaaAgUGGugGCaGCAGuCUc -3'
miRNA:   3'- -CGCCGC-GC-CGU---UgACCugCG-CGUU-GA- -5'
6772 5' -58.5 NC_001875.2 + 126323 0.66 0.790292
Target:  5'- gGCGGC-CGGCGuaaACUGcGCGCGUg--- -3'
miRNA:   3'- -CGCCGcGCCGU---UGACcUGCGCGuuga -5'
6772 5' -58.5 NC_001875.2 + 33458 0.66 0.790292
Target:  5'- cGCGGC-CGGCcAgUGGucgaaagugGCGCGCcGCg -3'
miRNA:   3'- -CGCCGcGCCGuUgACC---------UGCGCGuUGa -5'
6772 5' -58.5 NC_001875.2 + 64720 0.66 0.790292
Target:  5'- aCGGCGCuggccaaggcgGGCGACgUGGGCGaaGCGAUc -3'
miRNA:   3'- cGCCGCG-----------CCGUUG-ACCUGCg-CGUUGa -5'
6772 5' -58.5 NC_001875.2 + 54957 0.66 0.790292
Target:  5'- uGCGcGCGCGuuuGCcGGACGCGUcGCUc -3'
miRNA:   3'- -CGC-CGCGCcguUGaCCUGCGCGuUGA- -5'
6772 5' -58.5 NC_001875.2 + 111166 0.66 0.790292
Target:  5'- aCGGCGCugcuuaGCGAUuuucuUGGGCGCGCugGGCg -3'
miRNA:   3'- cGCCGCGc-----CGUUG-----ACCUGCGCG--UUGa -5'
6772 5' -58.5 NC_001875.2 + 80520 0.66 0.790292
Target:  5'- aUGGCGCGuGCgAGCUGGcCGaCGCccACUa -3'
miRNA:   3'- cGCCGCGC-CG-UUGACCuGC-GCGu-UGA- -5'
6772 5' -58.5 NC_001875.2 + 97740 0.66 0.781169
Target:  5'- aGCGcGCGCGcucguGCAACcccggcacGGGCGUGUGGCUg -3'
miRNA:   3'- -CGC-CGCGC-----CGUUGa-------CCUGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 46151 0.66 0.781169
Target:  5'- cGCGGCGCGcaAGCUGGucgaguCGCuGCAGg- -3'
miRNA:   3'- -CGCCGCGCcgUUGACCu-----GCG-CGUUga -5'
6772 5' -58.5 NC_001875.2 + 7087 0.66 0.781169
Target:  5'- gGCGGCagcuacuacGUGcGCGGCUcGGACG-GCGGCg -3'
miRNA:   3'- -CGCCG---------CGC-CGUUGA-CCUGCgCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 120743 0.66 0.781169
Target:  5'- uGCGGCGCcgagacggGGcCGugUccaGGGCGCGCGccACg -3'
miRNA:   3'- -CGCCGCG--------CC-GUugA---CCUGCGCGU--UGa -5'
6772 5' -58.5 NC_001875.2 + 39034 0.66 0.781169
Target:  5'- cGCGGCGCGGC-ACguuACGCuGUAAgCUg -3'
miRNA:   3'- -CGCCGCGCCGuUGaccUGCG-CGUU-GA- -5'
6772 5' -58.5 NC_001875.2 + 831 0.66 0.771915
Target:  5'- gGUGGUGgGGC----GGugGUGCAGCa -3'
miRNA:   3'- -CGCCGCgCCGuugaCCugCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 122413 0.66 0.771915
Target:  5'- uGUGGCucaaguuuuGCGGCAAguuuaaaaUGGACGCGCc--- -3'
miRNA:   3'- -CGCCG---------CGCCGUUg-------ACCUGCGCGuuga -5'
6772 5' -58.5 NC_001875.2 + 81991 0.66 0.771915
Target:  5'- -aGGCGCGcCGGCcGG-CGCGCAAa- -3'
miRNA:   3'- cgCCGCGCcGUUGaCCuGCGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 116012 0.66 0.771915
Target:  5'- cGCGGUugcagucucGCGGCAcGCuguUGGugGUGCAGu- -3'
miRNA:   3'- -CGCCG---------CGCCGU-UG---ACCugCGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 128953 0.66 0.771915
Target:  5'- aGCGGCuaaGGCGugaGCUGGGCGaGCGGa- -3'
miRNA:   3'- -CGCCGcg-CCGU---UGACCUGCgCGUUga -5'
6772 5' -58.5 NC_001875.2 + 47670 0.66 0.771915
Target:  5'- aCGGaCGCGGCcGC-GG-CGCGCcGCg -3'
miRNA:   3'- cGCC-GCGCCGuUGaCCuGCGCGuUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.