miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6773 3' -52.9 NC_001875.2 + 82936 0.66 0.970975
Target:  5'- -aUGCUGCCGgGCGCgac--GAAAUa -3'
miRNA:   3'- gcACGGCGGCgCGCGauaaaCUUUGc -5'
6773 3' -52.9 NC_001875.2 + 107000 0.66 0.970975
Target:  5'- uCGUGCguuUGuuGUGCGUUGUUUGuGugGu -3'
miRNA:   3'- -GCACG---GCggCGCGCGAUAAACuUugC- -5'
6773 3' -52.9 NC_001875.2 + 106912 0.66 0.970975
Target:  5'- uCGUGCguuUGuuGUGCGUUGUUUGuGugGu -3'
miRNA:   3'- -GCACG---GCggCGCGCGAUAAACuUugC- -5'
6773 3' -52.9 NC_001875.2 + 102411 0.66 0.970975
Target:  5'- aCGUGUCGgCGuCGCGCUcgccgUUGccGAGCGc -3'
miRNA:   3'- -GCACGGCgGC-GCGCGAua---AAC--UUUGC- -5'
6773 3' -52.9 NC_001875.2 + 106879 0.66 0.970975
Target:  5'- uCGUGCguuUGuuGUGCGUUGUUUGuGugGu -3'
miRNA:   3'- -GCACG---GCggCGCGCGAUAAACuUugC- -5'
6773 3' -52.9 NC_001875.2 + 48629 0.66 0.96793
Target:  5'- gGUGCCGCUGCuGCGCa---------- -3'
miRNA:   3'- gCACGGCGGCG-CGCGauaaacuuugc -5'
6773 3' -52.9 NC_001875.2 + 120789 0.66 0.96793
Target:  5'- -cUGCUGCaguuuGCGCGCguggUGAAACu -3'
miRNA:   3'- gcACGGCGg----CGCGCGauaaACUUUGc -5'
6773 3' -52.9 NC_001875.2 + 124770 0.66 0.96793
Target:  5'- -cUGCCGCC-CGUGUUGUU--GAGCGc -3'
miRNA:   3'- gcACGGCGGcGCGCGAUAAacUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 97868 0.66 0.96793
Target:  5'- aCGUGCCggucgGCUGCGCGCcgcacgGgcACGu -3'
miRNA:   3'- -GCACGG-----CGGCGCGCGauaaa-CuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 69620 0.66 0.96793
Target:  5'- aCGUGCUGuuGgCGCGCgaggUG-GACGc -3'
miRNA:   3'- -GCACGGCggC-GCGCGauaaACuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 100028 0.66 0.965997
Target:  5'- gGUGCacuGuuGCGCGCUGguuuugcuguuugUGGAGCu -3'
miRNA:   3'- gCACGg--CggCGCGCGAUaa-----------ACUUUGc -5'
6773 3' -52.9 NC_001875.2 + 67142 0.66 0.964664
Target:  5'- cCGUGuuGCUGCG-GCUGUcUGc-GCGg -3'
miRNA:   3'- -GCACggCGGCGCgCGAUAaACuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 92315 0.66 0.964664
Target:  5'- --cGCCGCaCGCGCGC-AUUguuAACa -3'
miRNA:   3'- gcaCGGCG-GCGCGCGaUAAacuUUGc -5'
6773 3' -52.9 NC_001875.2 + 62750 0.66 0.964664
Target:  5'- aCGUGUgGCC-CGCGCcg-UUGAAcGCGc -3'
miRNA:   3'- -GCACGgCGGcGCGCGauaAACUU-UGC- -5'
6773 3' -52.9 NC_001875.2 + 81993 0.66 0.964664
Target:  5'- gCGcGCCgGCCgGCGCGCaaaaaGAAGCGa -3'
miRNA:   3'- -GCaCGG-CGG-CGCGCGauaaaCUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 111983 0.66 0.962596
Target:  5'- cCGcGCCGCgacgcggccgagucuUGCGCGCUGUUUuacAACGa -3'
miRNA:   3'- -GCaCGGCG---------------GCGCGCGAUAAAcu-UUGC- -5'
6773 3' -52.9 NC_001875.2 + 29305 0.66 0.961172
Target:  5'- gCGUGUCG-UGCGCGUUGUUgcgcacAAACGg -3'
miRNA:   3'- -GCACGGCgGCGCGCGAUAAac----UUUGC- -5'
6773 3' -52.9 NC_001875.2 + 109015 0.66 0.961172
Target:  5'- uCGUGCCGCCGacgGUGCcGUcgGAccgcACGg -3'
miRNA:   3'- -GCACGGCGGCg--CGCGaUAaaCUu---UGC- -5'
6773 3' -52.9 NC_001875.2 + 100609 0.66 0.961172
Target:  5'- --cGCCgGCCGCGgcCGCUGUUUGccuCGu -3'
miRNA:   3'- gcaCGG-CGGCGC--GCGAUAAACuuuGC- -5'
6773 3' -52.9 NC_001875.2 + 1784 0.66 0.96081
Target:  5'- gGUGCgaacgcucucgaaCGgCGCGUGCUAUUUuuAGCGg -3'
miRNA:   3'- gCACG-------------GCgGCGCGCGAUAAAcuUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.