miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 5' -53.8 NC_001875.2 + 89346 0.65 0.953723
Target:  5'- cGGCGCACGCggacgacggcgugCGCGUgcgcgUGuuGCUGCGugGCu -3'
miRNA:   3'- aCUGCGUGCG-------------GUGCAa----AC--UGACGC--UG- -5'
6775 5' -53.8 NC_001875.2 + 16771 0.66 0.95166
Target:  5'- gUGACuGCGCGCCGCGUaaagcuucaccauguUUccaAUUGCGAg -3'
miRNA:   3'- -ACUG-CGUGCGGUGCA---------------AAc--UGACGCUg -5'
6775 5' -53.8 NC_001875.2 + 343 0.66 0.949967
Target:  5'- --cCGCGCGCCGCa---GACUGuCGAUc -3'
miRNA:   3'- acuGCGUGCGGUGcaaaCUGAC-GCUG- -5'
6775 5' -53.8 NC_001875.2 + 70181 0.66 0.949967
Target:  5'- uUGGCGCAgcgaGCCggGCGgc-GACgGCGACc -3'
miRNA:   3'- -ACUGCGUg---CGG--UGCaaaCUGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 66106 0.66 0.949967
Target:  5'- aGGCcCGCGCgGCGggcGGCgagGCGGCg -3'
miRNA:   3'- aCUGcGUGCGgUGCaaaCUGa--CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 51033 0.66 0.949967
Target:  5'- cGGCGcCACaGCCACGUgcaaaaUGAUUGCc-- -3'
miRNA:   3'- aCUGC-GUG-CGGUGCAa-----ACUGACGcug -5'
6775 5' -53.8 NC_001875.2 + 99735 0.66 0.949967
Target:  5'- --gUGCGCGCCuuguCGUgcucgUG-CUGUGACg -3'
miRNA:   3'- acuGCGUGCGGu---GCAa----ACuGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 54457 0.66 0.949967
Target:  5'- aGcCGCgGCGCCGCacagcGugUGCGGCa -3'
miRNA:   3'- aCuGCG-UGCGGUGcaaa-CugACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 17982 0.66 0.945562
Target:  5'- cGACGUGC-CCGCGUUcaACgUGCGGCc -3'
miRNA:   3'- aCUGCGUGcGGUGCAAacUG-ACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 80622 0.66 0.945562
Target:  5'- gGGCGCGCGgaaCGCGcgcucGACggGCGGCg -3'
miRNA:   3'- aCUGCGUGCg--GUGCaaa--CUGa-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 84304 0.66 0.945562
Target:  5'- aGAUGCGCGCCuaguaGCGgc-GcCUGCGGu -3'
miRNA:   3'- aCUGCGUGCGG-----UGCaaaCuGACGCUg -5'
6775 5' -53.8 NC_001875.2 + 127986 0.66 0.945562
Target:  5'- cGGCGgAuCGUCACauGUUggaGGCUGCGGCc -3'
miRNA:   3'- aCUGCgU-GCGGUG--CAAa--CUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 131513 0.66 0.945562
Target:  5'- cGGCGCGCGgUgcaGCGgcUGGaaGCGGCg -3'
miRNA:   3'- aCUGCGUGCgG---UGCaaACUgaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 81611 0.66 0.945562
Target:  5'- aGAUGcCGCGCCGCGccaaacGGCUGUuuguuGACa -3'
miRNA:   3'- aCUGC-GUGCGGUGCaaa---CUGACG-----CUG- -5'
6775 5' -53.8 NC_001875.2 + 100879 0.66 0.945108
Target:  5'- aGGCGCagcgcgcgcguggGCGCCAUGgcgaGACcugUGCGGCc -3'
miRNA:   3'- aCUGCG-------------UGCGGUGCaaa-CUG---ACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 4013 0.66 0.94091
Target:  5'- -aACGcCGCGCC-CGUcUGACUGCu-- -3'
miRNA:   3'- acUGC-GUGCGGuGCAaACUGACGcug -5'
6775 5' -53.8 NC_001875.2 + 3092 0.66 0.94091
Target:  5'- cGGCGUgcacGCGCCGgGgcgcGGCUcGCGGCg -3'
miRNA:   3'- aCUGCG----UGCGGUgCaaa-CUGA-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 39359 0.66 0.94091
Target:  5'- cUGACGCcCGCCGucuCGUgccuaccCUGCGGCc -3'
miRNA:   3'- -ACUGCGuGCGGU---GCAaacu---GACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 5923 0.66 0.94091
Target:  5'- aUGGCGUuggguaGCGCCGCGcaggugGGC-GCGGCc -3'
miRNA:   3'- -ACUGCG------UGCGGUGCaaa---CUGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 2290 0.66 0.94091
Target:  5'- gUGAUGCGCGCgCGCcg-UGGCcGCGcGCa -3'
miRNA:   3'- -ACUGCGUGCG-GUGcaaACUGaCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.