miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 5' -54.8 NC_001875.2 + 48837 0.66 0.928811
Target:  5'- aCGGCG-CCGCuucaagCCCGCCGGCgacgaGCGGc -3'
miRNA:   3'- aGUUGCuGGCG------GGGUGGUUGaa---CGUC- -5'
6777 5' -54.8 NC_001875.2 + 88287 0.66 0.928811
Target:  5'- -aGACG-CCGCCCCGCCAcgUUcGCc- -3'
miRNA:   3'- agUUGCuGGCGGGGUGGUugAA-CGuc -5'
6777 5' -54.8 NC_001875.2 + 88522 0.66 0.927199
Target:  5'- aUCAGCGGCaCGCCCgccgcggcgucguuUAUUAACUuguUGCGGc -3'
miRNA:   3'- -AGUUGCUG-GCGGG--------------GUGGUUGA---ACGUC- -5'
6777 5' -54.8 NC_001875.2 + 63597 0.66 0.92335
Target:  5'- --uACGGCCaGCUCCACgAuuuCUUGCAa -3'
miRNA:   3'- aguUGCUGG-CGGGGUGgUu--GAACGUc -5'
6777 5' -54.8 NC_001875.2 + 39101 0.66 0.92335
Target:  5'- cCAACGcGCUGCUgCACCGguuaGCUgGCGGg -3'
miRNA:   3'- aGUUGC-UGGCGGgGUGGU----UGAaCGUC- -5'
6777 5' -54.8 NC_001875.2 + 9382 0.66 0.92335
Target:  5'- --cGCGcGCCGCa--GCCAACUUGCAa -3'
miRNA:   3'- aguUGC-UGGCGgggUGGUUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 90026 0.66 0.91764
Target:  5'- cUCAAgaGCuCGCCgCgCGCCAugUUGCAGc -3'
miRNA:   3'- -AGUUgcUG-GCGG-G-GUGGUugAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 76591 0.66 0.91764
Target:  5'- aCGGCGACCGCauuCCAUauguGCUacuugacaUGCAGg -3'
miRNA:   3'- aGUUGCUGGCGg--GGUGgu--UGA--------ACGUC- -5'
6777 5' -54.8 NC_001875.2 + 113734 0.66 0.91764
Target:  5'- cCGAUGAgCGaCuCCCACCAGCgaaacgaGCAGc -3'
miRNA:   3'- aGUUGCUgGC-G-GGGUGGUUGaa-----CGUC- -5'
6777 5' -54.8 NC_001875.2 + 106228 0.66 0.91764
Target:  5'- aUCAACGugCGCCUUAU---CUUGCGa -3'
miRNA:   3'- -AGUUGCugGCGGGGUGguuGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 9944 0.66 0.911682
Target:  5'- cUAGCGguGCUGCCCaCGCCGGCUUaUAGc -3'
miRNA:   3'- aGUUGC--UGGCGGG-GUGGUUGAAcGUC- -5'
6777 5' -54.8 NC_001875.2 + 107980 0.66 0.911682
Target:  5'- gCAACGGCUGCacguCCGCUGGCgaGCAc -3'
miRNA:   3'- aGUUGCUGGCGg---GGUGGUUGaaCGUc -5'
6777 5' -54.8 NC_001875.2 + 6933 0.66 0.90799
Target:  5'- gCGugGACCGCgcgcuacaacaaaacCCgCGCCucaacacguACUUGCAGg -3'
miRNA:   3'- aGUugCUGGCG---------------GG-GUGGu--------UGAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 114741 0.66 0.905479
Target:  5'- --uGCGGCCGCCaguggCGCgCGGCUUGCc- -3'
miRNA:   3'- aguUGCUGGCGGg----GUG-GUUGAACGuc -5'
6777 5' -54.8 NC_001875.2 + 40128 0.66 0.905479
Target:  5'- cCGACGGCCGUCaCCuCCAuggGCUgGCAc -3'
miRNA:   3'- aGUUGCUGGCGG-GGuGGU---UGAaCGUc -5'
6777 5' -54.8 NC_001875.2 + 42453 0.66 0.905479
Target:  5'- gUCAGCGGCCGCUgCgGCgAGCcacGCAGc -3'
miRNA:   3'- -AGUUGCUGGCGG-GgUGgUUGaa-CGUC- -5'
6777 5' -54.8 NC_001875.2 + 131007 0.66 0.904845
Target:  5'- -gGACGugcugcaccACCGCCCCACCAccagcaaGCUguuucUGCGc -3'
miRNA:   3'- agUUGC---------UGGCGGGGUGGU-------UGA-----ACGUc -5'
6777 5' -54.8 NC_001875.2 + 43601 0.66 0.899032
Target:  5'- gCAGCGGCgGCgCgCGCC-GCUUGCGc -3'
miRNA:   3'- aGUUGCUGgCGgG-GUGGuUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 41541 0.66 0.899032
Target:  5'- ---gUGACCGaCgCCugCAACUUGCGc -3'
miRNA:   3'- aguuGCUGGC-GgGGugGUUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 121439 0.66 0.899032
Target:  5'- gCAGCGGgUGCCgCGCCAcgGCgcgGCGGc -3'
miRNA:   3'- aGUUGCUgGCGGgGUGGU--UGaa-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.