miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 5' -52.9 NC_001875.2 + 88224 0.66 0.956493
Target:  5'- -cAUugGGCAAaaacGGCGCA--AGCGGCGc -3'
miRNA:   3'- gcUAugUCGUU----CCGCGUguUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 46513 0.66 0.956493
Target:  5'- uCGcgGCgGGCGGGGCGagaGCGcccGCGGCAa -3'
miRNA:   3'- -GCuaUG-UCGUUCCGCg--UGUu--CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 129965 0.66 0.956493
Target:  5'- gGcgGCGGCGGcGGCgGCGgcGGCGGCAu -3'
miRNA:   3'- gCuaUGUCGUU-CCG-CGUguUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 126830 0.66 0.956493
Target:  5'- cCGAgGCGGCGcaaaGUGCACAagugccgcacAGCAGCGa -3'
miRNA:   3'- -GCUaUGUCGUuc--CGCGUGU----------UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 1023 0.66 0.955288
Target:  5'- --uUGCAGCGcguggcggggcccgAGGCGCACAGcGUugGGCGc -3'
miRNA:   3'- gcuAUGUCGU--------------UCCGCGUGUU-CG--UCGU- -5'
6778 5' -52.9 NC_001875.2 + 102848 0.66 0.95239
Target:  5'- -cGUACAGCAgauGGGacaGguUggGCAGCGg -3'
miRNA:   3'- gcUAUGUCGU---UCCg--CguGuuCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 11984 0.66 0.95239
Target:  5'- gGcgACGGCGuuGGGCGCGgGuguGGUGGCGa -3'
miRNA:   3'- gCuaUGUCGU--UCCGCGUgU---UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 84598 0.66 0.95239
Target:  5'- uGGUGCA-CGAGGCuGUACAcGCGGUc -3'
miRNA:   3'- gCUAUGUcGUUCCG-CGUGUuCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 52502 0.66 0.948036
Target:  5'- uGGUaaACAGC--GGCGCcaaAGGCAGCGc -3'
miRNA:   3'- gCUA--UGUCGuuCCGCGug-UUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 84351 0.66 0.948036
Target:  5'- gCGGaGCGGCugcgccgguAGGUGCGCGgccugccggGGCGGCGu -3'
miRNA:   3'- -GCUaUGUCGu--------UCCGCGUGU---------UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 108884 0.66 0.948036
Target:  5'- ---cGCGGCgGAGGCGUACAuGGCGccGCAc -3'
miRNA:   3'- gcuaUGUCG-UUCCGCGUGU-UCGU--CGU- -5'
6778 5' -52.9 NC_001875.2 + 68289 0.66 0.948036
Target:  5'- gGAcauCAGgGAGGUGCAgGAGguGUAc -3'
miRNA:   3'- gCUau-GUCgUUCCGCGUgUUCguCGU- -5'
6778 5' -52.9 NC_001875.2 + 61592 0.66 0.948036
Target:  5'- gGcgACGGCucGGGCGC-C-GGCGGCGc -3'
miRNA:   3'- gCuaUGUCGu-UCCGCGuGuUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 24005 0.66 0.948036
Target:  5'- ---cGCGucGCAAGGCGCAcCGGGC-GCGg -3'
miRNA:   3'- gcuaUGU--CGUUCCGCGU-GUUCGuCGU- -5'
6778 5' -52.9 NC_001875.2 + 66094 0.66 0.948036
Target:  5'- aCGaAUACGcCGAGGCccGCGCGgcgGGCGGCGa -3'
miRNA:   3'- -GC-UAUGUcGUUCCG--CGUGU---UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 112218 0.66 0.948036
Target:  5'- gCGcUGCAGCGAGGCGUGgaaaAAGUcguGCAa -3'
miRNA:   3'- -GCuAUGUCGUUCCGCGUg---UUCGu--CGU- -5'
6778 5' -52.9 NC_001875.2 + 50526 0.66 0.948036
Target:  5'- aCGAUGacgaGGagGAGGCGcCGCcGGCGGCGc -3'
miRNA:   3'- -GCUAUg---UCg-UUCCGC-GUGuUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 3105 0.66 0.948036
Target:  5'- cCGGggcGCGGCucgcGGCGCAgaccUggGCGGCGa -3'
miRNA:   3'- -GCUa--UGUCGuu--CCGCGU----GuuCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 23256 0.66 0.943426
Target:  5'- aGA-ACAGCGacGGGCaGCGCAGcGcCAGCAc -3'
miRNA:   3'- gCUaUGUCGU--UCCG-CGUGUU-C-GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 84105 0.66 0.943426
Target:  5'- uGA-AguGCucacuGGGCGCcggcuCAAGCAGCAg -3'
miRNA:   3'- gCUaUguCGu----UCCGCGu----GUUCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.