miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 5' -57.7 NC_001875.2 + 13634 0.66 0.836219
Target:  5'- uGGC-AGGCGGuugcCGCGCCGCCgc-UCa- -3'
miRNA:   3'- -CUGuUCCGCU----GCGCGGCGGacaAGcg -5'
6779 5' -57.7 NC_001875.2 + 90455 0.66 0.836219
Target:  5'- aGGCGucgguGGGCGGCGCGUaauuuCGCUgcagCGCg -3'
miRNA:   3'- -CUGU-----UCCGCUGCGCG-----GCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 98937 0.66 0.836219
Target:  5'- cGCGuGcGCGACGCG-CGCgUGUUCaGCc -3'
miRNA:   3'- cUGUuC-CGCUGCGCgGCGgACAAG-CG- -5'
6779 5' -57.7 NC_001875.2 + 89265 0.66 0.836219
Target:  5'- uGACGcGcGCG-UGCGCCGaCCUGg-CGCg -3'
miRNA:   3'- -CUGUuC-CGCuGCGCGGC-GGACaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 76943 0.66 0.836219
Target:  5'- aGCGAGGacgaaGACGCGCCgugcgaGCCcaaGUgCGCg -3'
miRNA:   3'- cUGUUCCg----CUGCGCGG------CGGa--CAaGCG- -5'
6779 5' -57.7 NC_001875.2 + 126893 0.66 0.836219
Target:  5'- aGAcCGAGGCGGCGCaaaguguuaguGCUGCCc---CGCa -3'
miRNA:   3'- -CU-GUUCCGCUGCG-----------CGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 74890 0.66 0.836219
Target:  5'- uACAAcGGCGACGUGUuugacuUGCCguacaUUCGCg -3'
miRNA:   3'- cUGUU-CCGCUGCGCG------GCGGac---AAGCG- -5'
6779 5' -57.7 NC_001875.2 + 74095 0.66 0.836219
Target:  5'- --gGAGGCGuuucgcgacuACGCGCCGCgCgacUUUGCg -3'
miRNA:   3'- cugUUCCGC----------UGCGCGGCG-Gac-AAGCG- -5'
6779 5' -57.7 NC_001875.2 + 6962 0.66 0.836219
Target:  5'- cGACAucGCcacGGCGCGCUGCUUGacaGCg -3'
miRNA:   3'- -CUGUucCG---CUGCGCGGCGGACaagCG- -5'
6779 5' -57.7 NC_001875.2 + 57418 0.66 0.836219
Target:  5'- uGC-AGGCGGCGUGCaacugcauguCGUCcGUUUGCa -3'
miRNA:   3'- cUGuUCCGCUGCGCG----------GCGGaCAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 79789 0.66 0.836219
Target:  5'- gGGCAgguaGGGCGGgucguCGgGCCGCUUGaaCGUg -3'
miRNA:   3'- -CUGU----UCCGCU-----GCgCGGCGGACaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 59495 0.66 0.834573
Target:  5'- aGACAAGcGCGucgagugccccAUGUGCCGCCgcaaaaacgCGCa -3'
miRNA:   3'- -CUGUUC-CGC-----------UGCGCGGCGGacaa-----GCG- -5'
6779 5' -57.7 NC_001875.2 + 77471 0.66 0.827915
Target:  5'- cGAcCAAGGCG-UGCGCuCGCCcaa-CGCg -3'
miRNA:   3'- -CU-GUUCCGCuGCGCG-GCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 19868 0.66 0.827915
Target:  5'- cGCGucGCGGCGCgGgCGCC-GUUUGCg -3'
miRNA:   3'- cUGUucCGCUGCG-CgGCGGaCAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 71928 0.66 0.827915
Target:  5'- cGGCGAGcgccuugaccgcGCGcuccGCGCGCaGCCUGU-CGCc -3'
miRNA:   3'- -CUGUUC------------CGC----UGCGCGgCGGACAaGCG- -5'
6779 5' -57.7 NC_001875.2 + 102994 0.66 0.827915
Target:  5'- gGGCAcguGGUGGCGUGCgGCaaGUgCGCu -3'
miRNA:   3'- -CUGUu--CCGCUGCGCGgCGgaCAaGCG- -5'
6779 5' -57.7 NC_001875.2 + 113075 0.66 0.82539
Target:  5'- uGGCuuugauGGCGACGCgcgucagcgccuuaGCCGCCgugGUgagCGUu -3'
miRNA:   3'- -CUGuu----CCGCUGCG--------------CGGCGGa--CAa--GCG- -5'
6779 5' -57.7 NC_001875.2 + 82678 0.66 0.822848
Target:  5'- cGGCGAGGUugucgaGAauuucguccugguaGCGCCGCCag-UCGCg -3'
miRNA:   3'- -CUGUUCCG------CUg-------------CGCGGCGGacaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 61506 0.66 0.819435
Target:  5'- cGGCucGGCGcCGCaGuCCGCgUGcUCGCg -3'
miRNA:   3'- -CUGuuCCGCuGCG-C-GGCGgACaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 40390 0.66 0.819435
Target:  5'- gGACAuGcGCGcccACGCGCCGCCgcucaGCu -3'
miRNA:   3'- -CUGUuC-CGC---UGCGCGGCGGacaagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.