Results 1 - 20 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 109846 | 0.66 | 0.878485 |
Target: 5'- gCCGGCGgauuuGCUGCgcGcGUuugccaagcUGGCGCUGGCg -3' miRNA: 3'- -GGCUGC-----UGGUGaaC-CA---------ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 65434 | 0.66 | 0.878485 |
Target: 5'- uCCGGCGugCACc--GcUGGCGgUCGGUg -3' miRNA: 3'- -GGCUGCugGUGaacCaACCGC-GGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 11805 | 0.66 | 0.878485 |
Target: 5'- uUGcCGGCCGCgucgguguuugUGGUc-GCGCCGGUg -3' miRNA: 3'- gGCuGCUGGUGa----------ACCAacCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 28600 | 0.66 | 0.878485 |
Target: 5'- aCCGccuACGAaaACcUGGUUGaGCgcaagGCCGGCg -3' miRNA: 3'- -GGC---UGCUggUGaACCAAC-CG-----CGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 114027 | 0.66 | 0.878485 |
Target: 5'- aUGGCGGCCGCgcGGUccagaUGGUagcacGCgGGCu -3' miRNA: 3'- gGCUGCUGGUGaaCCA-----ACCG-----CGgCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 15925 | 0.66 | 0.878485 |
Target: 5'- aCCGGCaacauGACCcaGC-UGGcggGGCGCCaGCa -3' miRNA: 3'- -GGCUG-----CUGG--UGaACCaa-CCGCGGcCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 10664 | 0.66 | 0.871354 |
Target: 5'- gCGGCGGacugCACUUGGcgcaGGCGCUGccGCa -3' miRNA: 3'- gGCUGCUg---GUGAACCaa--CCGCGGC--CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 68699 | 0.66 | 0.871354 |
Target: 5'- cCCGugGACC-Cgu-----GCGCCGGCc -3' miRNA: 3'- -GGCugCUGGuGaaccaacCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 77628 | 0.66 | 0.870629 |
Target: 5'- aUCGGCGGCaacgGCUcgGGUcUGGUGCCgaacccgGGCg -3' miRNA: 3'- -GGCUGCUGg---UGAa-CCA-ACCGCGG-------CCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 56679 | 0.66 | 0.870629 |
Target: 5'- gUGACuacauuaGACCGCUgugcaacGGUUGGCcgagGCCGcGCg -3' miRNA: 3'- gGCUG-------CUGGUGAa------CCAACCG----CGGC-CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 14486 | 0.66 | 0.870629 |
Target: 5'- cCCGACGGCCAgccggccCgccGGUUcgcccGCGCCGcGCc -3' miRNA: 3'- -GGCUGCUGGU-------Gaa-CCAAc----CGCGGC-CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 111771 | 0.66 | 0.86771 |
Target: 5'- gCCGACGACUggugucgcuggugACggcGGUgcacgcggccgacGGCGCCuGGCu -3' miRNA: 3'- -GGCUGCUGG-------------UGaa-CCAa------------CCGCGG-CCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 57689 | 0.66 | 0.864015 |
Target: 5'- gCUGGCGGCgGCg-----GGCGCCGcGCc -3' miRNA: 3'- -GGCUGCUGgUGaaccaaCCGCGGC-CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 10865 | 0.66 | 0.864015 |
Target: 5'- aCGACGcggugGCCGCgucGG-UGGCGCUGccGCg -3' miRNA: 3'- gGCUGC-----UGGUGaa-CCaACCGCGGC--CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 82267 | 0.66 | 0.862522 |
Target: 5'- gUCGGCGcgcaGCUGCUUGGccacuacaauucUGGCGUCGGg -3' miRNA: 3'- -GGCUGC----UGGUGAACCa-----------ACCGCGGCCg -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 31961 | 0.66 | 0.861022 |
Target: 5'- gCCGGCGACgACgaacgcgugUGGCGCgcguaCGGCc -3' miRNA: 3'- -GGCUGCUGgUGaacca----ACCGCG-----GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 21592 | 0.66 | 0.859513 |
Target: 5'- aCGugGACCACUUGaacagcgacaugGGUGUggUGGCu -3' miRNA: 3'- gGCugCUGGUGAACcaa---------CCGCG--GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 48386 | 0.66 | 0.856472 |
Target: 5'- uCCGACG-CgGCgaca--GGUGCCGGCu -3' miRNA: 3'- -GGCUGCuGgUGaaccaaCCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 94274 | 0.66 | 0.856472 |
Target: 5'- --uGCGAUUA--UGGUuuccuUGGCGCCGGUa -3' miRNA: 3'- ggcUGCUGGUgaACCA-----ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 40464 | 0.66 | 0.856472 |
Target: 5'- cCCGAgGGCg---UGG-UGGUGCCGGg -3' miRNA: 3'- -GGCUgCUGgugaACCaACCGCGGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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