miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 3' -54.5 NC_001875.2 + 7131 0.66 0.938988
Target:  5'- aCGCgCCGcUUGCCAGGCGcGUuggcCGAAggGCc -3'
miRNA:   3'- -GCG-GGC-AGCGGUCCGU-CAu---GUUUa-CG- -5'
6785 3' -54.5 NC_001875.2 + 16764 0.66 0.938988
Target:  5'- gGUgCGUCaCCGGGUAGUAUAuaaaGCg -3'
miRNA:   3'- gCGgGCAGcGGUCCGUCAUGUuua-CG- -5'
6785 3' -54.5 NC_001875.2 + 79824 0.66 0.938988
Target:  5'- uGCCCGgcaugguggUGCCagcaagaagGGGCAGUugGAAUa- -3'
miRNA:   3'- gCGGGCa--------GCGG---------UCCGUCAugUUUAcg -5'
6785 3' -54.5 NC_001875.2 + 100854 0.66 0.938988
Target:  5'- aGCUCGUCugcgGCCAGGUcGUAUucGUGa -3'
miRNA:   3'- gCGGGCAG----CGGUCCGuCAUGuuUACg -5'
6785 3' -54.5 NC_001875.2 + 114050 0.66 0.938988
Target:  5'- gGCaCCGUCGCCAccuuGUACAAGcUGUa -3'
miRNA:   3'- gCG-GGCAGCGGUccguCAUGUUU-ACG- -5'
6785 3' -54.5 NC_001875.2 + 27868 0.66 0.938988
Target:  5'- cCGCCCaUUuCCAuGGCAGacuCGAAUGCc -3'
miRNA:   3'- -GCGGGcAGcGGU-CCGUCau-GUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 9954 0.66 0.938988
Target:  5'- uGCgCGUCGacgaCAGcGUGGUGCAAuugacggcGUGCa -3'
miRNA:   3'- gCGgGCAGCg---GUC-CGUCAUGUU--------UACG- -5'
6785 3' -54.5 NC_001875.2 + 98636 0.66 0.938988
Target:  5'- gCGCCCGcguUUGCC-GGCAGcgagGCGcuggAAUGUa -3'
miRNA:   3'- -GCGGGC---AGCGGuCCGUCa---UGU----UUACG- -5'
6785 3' -54.5 NC_001875.2 + 16213 0.66 0.938988
Target:  5'- gGCCCGUguuugaGUCGGGCgAGUGUGAcUGCg -3'
miRNA:   3'- gCGGGCAg-----CGGUCCG-UCAUGUUuACG- -5'
6785 3' -54.5 NC_001875.2 + 80877 0.66 0.938988
Target:  5'- gGCgCG-CGCCAaagaguGGCAGaGCAAGUcGCg -3'
miRNA:   3'- gCGgGCaGCGGU------CCGUCaUGUUUA-CG- -5'
6785 3' -54.5 NC_001875.2 + 32542 0.66 0.938988
Target:  5'- aGCCCGUauacaacgcCGCCgaGGaGCGGcUGCAgcAGUGCc -3'
miRNA:   3'- gCGGGCA---------GCGG--UC-CGUC-AUGU--UUACG- -5'
6785 3' -54.5 NC_001875.2 + 118944 0.66 0.934024
Target:  5'- gGCCgG-CGCUAGGguGUcGCAAgcuuGUGUa -3'
miRNA:   3'- gCGGgCaGCGGUCCguCA-UGUU----UACG- -5'
6785 3' -54.5 NC_001875.2 + 10345 0.66 0.934024
Target:  5'- gCGCCCGUgauucaaauugCGCCGGGC--UACGGccugGCc -3'
miRNA:   3'- -GCGGGCA-----------GCGGUCCGucAUGUUua--CG- -5'
6785 3' -54.5 NC_001875.2 + 111906 0.66 0.934024
Target:  5'- gCGCCgGcCGCUccguguacGGGcCGGUGCAGcUGCc -3'
miRNA:   3'- -GCGGgCaGCGG--------UCC-GUCAUGUUuACG- -5'
6785 3' -54.5 NC_001875.2 + 89049 0.66 0.928811
Target:  5'- uGCCCGU-GCgCGGGCuGGU-CAAaauuGUGCg -3'
miRNA:   3'- gCGGGCAgCG-GUCCG-UCAuGUU----UACG- -5'
6785 3' -54.5 NC_001875.2 + 87946 0.66 0.928811
Target:  5'- aCGCCCG-CGCCucuGCAagacCAAAUGCc -3'
miRNA:   3'- -GCGGGCaGCGGuc-CGUcau-GUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 42564 0.66 0.928811
Target:  5'- gCGCCCagccgCGCCAGGuCGGcGCAcgcGCg -3'
miRNA:   3'- -GCGGGca---GCGGUCC-GUCaUGUuuaCG- -5'
6785 3' -54.5 NC_001875.2 + 113783 0.66 0.92335
Target:  5'- gCGCCCGaaGCgGcGGCAGUACGc---- -3'
miRNA:   3'- -GCGGGCagCGgU-CCGUCAUGUuuacg -5'
6785 3' -54.5 NC_001875.2 + 82163 0.66 0.92335
Target:  5'- uGCUgGcCGaCGGGCGGUAC--GUGCg -3'
miRNA:   3'- gCGGgCaGCgGUCCGUCAUGuuUACG- -5'
6785 3' -54.5 NC_001875.2 + 34092 0.66 0.92335
Target:  5'- aCGCCCGU-GCCGGGguuGcACGAGcGCg -3'
miRNA:   3'- -GCGGGCAgCGGUCCgu-CaUGUUUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.