miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 6952 0.66 0.72592
Target:  5'- --gCGUGCGCCGCGacaucgcCACGGCGcgcugcuugacagcGGGCa -3'
miRNA:   3'- ugaGCGCGCGGUGC-------GUGUCGUa-------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 43858 0.66 0.722986
Target:  5'- uGCgCGgGCGUCGCGUAC-GC--GGGCg -3'
miRNA:   3'- -UGaGCgCGCGGUGCGUGuCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 29798 0.66 0.722986
Target:  5'- gACUgUGCGgGCgCugGCGgcGCAUGGGUc -3'
miRNA:   3'- -UGA-GCGCgCG-GugCGUguCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 102566 0.66 0.722986
Target:  5'- gAC-CGCGCcCCGCcgGCGCGGUcgGcGGCc -3'
miRNA:   3'- -UGaGCGCGcGGUG--CGUGUCGuaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 84906 0.66 0.722986
Target:  5'- cCUUG-GCGUa--GCGCAGCAcgGGGCu -3'
miRNA:   3'- uGAGCgCGCGgugCGUGUCGUa-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 57669 0.66 0.722986
Target:  5'- aGCUCGCaaaacGCGuCCAaGCugGCGGCGgcGGGCg -3'
miRNA:   3'- -UGAGCG-----CGC-GGUgCG--UGUCGUa-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 2849 0.66 0.722986
Target:  5'- ---aGCGUGUUGCGCcaagaauuuguaGCAGCGguugGGGCg -3'
miRNA:   3'- ugagCGCGCGGUGCG------------UGUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 41810 0.66 0.722986
Target:  5'- gGCaCGCGCGCCgGCGCcGCGGCcaguUGcGCg -3'
miRNA:   3'- -UGaGCGCGCGG-UGCG-UGUCGu---ACcCG- -5'
6840 5' -59.8 NC_001875.2 + 9699 0.66 0.722986
Target:  5'- gGCUCGCcgucgugcGCGCCGgcCGCGCcgcgcccgaAGCGUGG-Ca -3'
miRNA:   3'- -UGAGCG--------CGCGGU--GCGUG---------UCGUACCcG- -5'
6840 5' -59.8 NC_001875.2 + 74150 0.66 0.722006
Target:  5'- uUUCGCGUGauGCGCAUcuacuacaacgaaGGCggGGGCa -3'
miRNA:   3'- uGAGCGCGCggUGCGUG-------------UCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 92580 0.66 0.722006
Target:  5'- aGC-CGCcccGCGUCGCGCAguuucucCAGCAUGcGCg -3'
miRNA:   3'- -UGaGCG---CGCGGUGCGU-------GUCGUACcCG- -5'
6840 5' -59.8 NC_001875.2 + 72957 0.66 0.720044
Target:  5'- uUUCGgGCGCCACGgCGCGccugauuagguugcGCAaaaacccGGGCa -3'
miRNA:   3'- uGAGCgCGCGGUGC-GUGU--------------CGUa------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 82242 0.66 0.717096
Target:  5'- cGCUUGCGCGCuggugguagcgcucgUcgGCGCGCAGCugcuuGGCc -3'
miRNA:   3'- -UGAGCGCGCG---------------G--UGCGUGUCGuac--CCG- -5'
6840 5' -59.8 NC_001875.2 + 30202 0.66 0.714141
Target:  5'- --aCGUGUGCUACGCGuCAGCGgcgacccugcuuuucGGGUg -3'
miRNA:   3'- ugaGCGCGCGGUGCGU-GUCGUa--------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 124704 0.66 0.713155
Target:  5'- cUUCGgccaaCGCGCCugGCaaGCGGCGcGuGGCg -3'
miRNA:   3'- uGAGC-----GCGCGGugCG--UGUCGUaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 119893 0.66 0.713155
Target:  5'- --aCGCGcCGCCggucgcGCGCACAGUcgGcGCg -3'
miRNA:   3'- ugaGCGC-GCGG------UGCGUGUCGuaCcCG- -5'
6840 5' -59.8 NC_001875.2 + 89015 0.66 0.713155
Target:  5'- cGCUaCGCGUGCgaGCGCAaguugucauuCAGCGUgcccgugcgcGGGCu -3'
miRNA:   3'- -UGA-GCGCGCGg-UGCGU----------GUCGUA----------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 4435 0.66 0.713155
Target:  5'- uGCUgaCGCGCGCCGCcaGCACuuuGGCca-GGCu -3'
miRNA:   3'- -UGA--GCGCGCGGUG--CGUG---UCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 94476 0.66 0.713155
Target:  5'- aGCggCGCGCGCguuCGCACgAGCGcGcGGCc -3'
miRNA:   3'- -UGa-GCGCGCGgu-GCGUG-UCGUaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 90384 0.66 0.712168
Target:  5'- cGCcgCGCGCGCCGCaaccggcgccuguGCGCGcGCAgcGGCc -3'
miRNA:   3'- -UGa-GCGCGCGGUG-------------CGUGU-CGUacCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.