miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 3' -58.3 NC_001875.2 + 16083 0.66 0.729559
Target:  5'- uCGC-GGCGGUuugaaaUGCGCuGCAacGCGCGAGa -3'
miRNA:   3'- -GCGuCCGUCG------ACGUGuCGU--CGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 42738 0.66 0.729559
Target:  5'- uCGCGcGCGGCgacGCGCauggugAGCGGCGCGc- -3'
miRNA:   3'- -GCGUcCGUCGa--CGUG------UCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 35854 0.66 0.729559
Target:  5'- uGCAGGgUA-CUGCACGGC-GCGCu-- -3'
miRNA:   3'- gCGUCC-GUcGACGUGUCGuCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 100988 0.66 0.729559
Target:  5'- uGCAGGCcGCgGCguuuGCGGCGguuuuGCGCAAc -3'
miRNA:   3'- gCGUCCGuCGaCG----UGUCGU-----CGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 120832 0.66 0.71941
Target:  5'- gGCAGGCAcaccaugggcacGC-GCGCcuGCAGCGCu-- -3'
miRNA:   3'- gCGUCCGU------------CGaCGUGu-CGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 57201 0.66 0.71941
Target:  5'- gGCcauGGCAcGCUGCcgACAGCgcAGUGCAGc -3'
miRNA:   3'- gCGu--CCGU-CGACG--UGUCG--UCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 89983 0.66 0.71941
Target:  5'- aGCAGuuguuGCAGCUcGcCGCcGCGGCGCGGc -3'
miRNA:   3'- gCGUC-----CGUCGA-C-GUGuCGUCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 88714 0.66 0.71941
Target:  5'- aGCcuGCAGUggaUGCGCGGCGGCuccaaccugccGCAAAa -3'
miRNA:   3'- gCGucCGUCG---ACGUGUCGUCG-----------CGUUU- -5'
6842 3' -58.3 NC_001875.2 + 33345 0.66 0.71941
Target:  5'- uCGCccGGCAGCcaaucacGCACgcGGCAGuCGCAAAa -3'
miRNA:   3'- -GCGu-CCGUCGa------CGUG--UCGUC-GCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 126031 0.66 0.71941
Target:  5'- gCGCuGGCAGUcuacuaccuuaUGCGCAGCcG-GCAAAu -3'
miRNA:   3'- -GCGuCCGUCG-----------ACGUGUCGuCgCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 2667 0.66 0.71941
Target:  5'- gCGCcGGCGGCgccugggGCAacuGCGGCGCc-- -3'
miRNA:   3'- -GCGuCCGUCGa------CGUgu-CGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 80894 0.66 0.71941
Target:  5'- gGCAGaGCaAGUcGCGCgAGCGGCGCc-- -3'
miRNA:   3'- gCGUC-CG-UCGaCGUG-UCGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 32489 0.66 0.718391
Target:  5'- gGCGGGCgcgcccaAGUUGCGCGGaCAcgacgcuucGCGCAAc -3'
miRNA:   3'- gCGUCCG-------UCGACGUGUC-GU---------CGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 100704 0.66 0.709183
Target:  5'- gCGCGGcGCguuaAGCaUGCACAuugcuGCGGCGCGc- -3'
miRNA:   3'- -GCGUC-CG----UCG-ACGUGU-----CGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 59568 0.66 0.709183
Target:  5'- uCGguGGauguGUUGCGCuGCAGCGUg-- -3'
miRNA:   3'- -GCguCCgu--CGACGUGuCGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 47480 0.66 0.709183
Target:  5'- gGCAGGCcGC-GCACcuacCGGCGCAGc -3'
miRNA:   3'- gCGUCCGuCGaCGUGuc--GUCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 104143 0.66 0.709183
Target:  5'- uCGUuGuGCGGCUcaaACGGCGGCGCGAu -3'
miRNA:   3'- -GCGuC-CGUCGAcg-UGUCGUCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 130095 0.66 0.709183
Target:  5'- cCGCcgacggaaauGGCGGCg--GCGGCGGCGCGAc -3'
miRNA:   3'- -GCGu---------CCGUCGacgUGUCGUCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 126528 0.66 0.709183
Target:  5'- aGCAGGUAGC-GCGCAauggaguggucGUcgGGCGCGGg -3'
miRNA:   3'- gCGUCCGUCGaCGUGU-----------CG--UCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 92536 0.66 0.709183
Target:  5'- cCGCcGGCAcGgUGUGCAGC-GCGCAc- -3'
miRNA:   3'- -GCGuCCGU-CgACGUGUCGuCGCGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.