miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6844 3' -55 NC_001875.2 + 69444 0.65 0.902538
Target:  5'- -cGCcGGCguuuGCGCGccGGCCACGcuaaacaacGUGCg -3'
miRNA:   3'- uaCGuUCG----UGCGCaaCCGGUGU---------CACG- -5'
6844 3' -55 NC_001875.2 + 75073 0.65 0.902538
Target:  5'- cGUGCAagGGCAgGCuaaaauaGCUGCAGUGCa -3'
miRNA:   3'- -UACGU--UCGUgCGcaac---CGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 64947 0.65 0.902538
Target:  5'- uAUGCAaaacacgauGGCGcCGCGaauuaGGCCGCGGUcguGCa -3'
miRNA:   3'- -UACGU---------UCGU-GCGCaa---CCGGUGUCA---CG- -5'
6844 3' -55 NC_001875.2 + 66048 0.65 0.902538
Target:  5'- -cGCAGGCAcCGCGcgccgacGCCGCGcgcGUGCu -3'
miRNA:   3'- uaCGUUCGU-GCGCaac----CGGUGU---CACG- -5'
6844 3' -55 NC_001875.2 + 124721 0.65 0.901883
Target:  5'- -gGCAAGCgGCGCGUggcGGUCaaugucgGCAGcGCg -3'
miRNA:   3'- uaCGUUCG-UGCGCAa--CCGG-------UGUCaCG- -5'
6844 3' -55 NC_001875.2 + 94476 0.65 0.901883
Target:  5'- -aGCGGcGCGCGCGUUcgcacgagcgcgcGGCCGCGc-GCa -3'
miRNA:   3'- uaCGUU-CGUGCGCAA-------------CCGGUGUcaCG- -5'
6844 3' -55 NC_001875.2 + 92085 0.66 0.895877
Target:  5'- --cCAGGCGCGCGUgggguUGGCCACc---- -3'
miRNA:   3'- uacGUUCGUGCGCA-----ACCGGUGucacg -5'
6844 3' -55 NC_001875.2 + 84670 0.66 0.895877
Target:  5'- uUGCAuucguGCA-GCGUUGGUgGCGGgaacGCa -3'
miRNA:   3'- uACGUu----CGUgCGCAACCGgUGUCa---CG- -5'
6844 3' -55 NC_001875.2 + 113552 0.66 0.895877
Target:  5'- --aUAAGCGCGCGaagcGGCCuu-GUGCg -3'
miRNA:   3'- uacGUUCGUGCGCaa--CCGGuguCACG- -5'
6844 3' -55 NC_001875.2 + 13799 0.66 0.895877
Target:  5'- cGUGCGgguGGCGCgGCGUugccgucgcacUGGUCGCGGUa- -3'
miRNA:   3'- -UACGU---UCGUG-CGCA-----------ACCGGUGUCAcg -5'
6844 3' -55 NC_001875.2 + 122521 0.66 0.895877
Target:  5'- -gGcCGGGCAgcuucgccgauUGCGUccGGCgCGCAGUGCa -3'
miRNA:   3'- uaC-GUUCGU-----------GCGCAa-CCG-GUGUCACG- -5'
6844 3' -55 NC_001875.2 + 125713 0.66 0.893831
Target:  5'- -cGCAAGCAUGUacgaGGCCagccaaauugacgaGCAGUGUu -3'
miRNA:   3'- uaCGUUCGUGCGcaa-CCGG--------------UGUCACG- -5'
6844 3' -55 NC_001875.2 + 10153 0.66 0.88897
Target:  5'- -cGCAAGCGCgGCGUggUGGCCgACGa--- -3'
miRNA:   3'- uaCGUUCGUG-CGCA--ACCGG-UGUcacg -5'
6844 3' -55 NC_001875.2 + 7140 0.66 0.88897
Target:  5'- uUGCcAG-GCGCGUUGGCCGaAGgGCc -3'
miRNA:   3'- uACGuUCgUGCGCAACCGGUgUCaCG- -5'
6844 3' -55 NC_001875.2 + 90516 0.66 0.88897
Target:  5'- uUGCAcggcGUACGCGUUGGUCAaaacgGCc -3'
miRNA:   3'- uACGUu---CGUGCGCAACCGGUguca-CG- -5'
6844 3' -55 NC_001875.2 + 16929 0.66 0.88897
Target:  5'- cGUGUuuGAGCgcaucgGCGCGUUGcGCCAC-GUGa -3'
miRNA:   3'- -UACG--UUCG------UGCGCAAC-CGGUGuCACg -5'
6844 3' -55 NC_001875.2 + 65575 0.66 0.88897
Target:  5'- cGUGCcagaaGAGCuuGUcccaGUUGGCggCGCAGUGCg -3'
miRNA:   3'- -UACG-----UUCGugCG----CAACCG--GUGUCACG- -5'
6844 3' -55 NC_001875.2 + 92520 0.66 0.88897
Target:  5'- cUGC-AGCGCGCGcacgccgccGGCaCGguGUGCa -3'
miRNA:   3'- uACGuUCGUGCGCaa-------CCG-GUguCACG- -5'
6844 3' -55 NC_001875.2 + 7575 0.66 0.88897
Target:  5'- -aGC-GGCACcccuguuuugGCGUgaucaaggauuuUGGCCGgCAGUGCa -3'
miRNA:   3'- uaCGuUCGUG----------CGCA------------ACCGGU-GUCACG- -5'
6844 3' -55 NC_001875.2 + 90013 0.66 0.88182
Target:  5'- -gGCAAcuGgACGCGcaacUGGCCGCGGcGCc -3'
miRNA:   3'- uaCGUU--CgUGCGCa---ACCGGUGUCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.