miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 5' -55.2 NC_001875.2 + 91229 0.66 0.896946
Target:  5'- aGGC-GCGuGguGGCGCccaccACGGCGCCGu -3'
miRNA:   3'- -CUGuCGC-CguCUGUGuu---UGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 37387 0.66 0.896946
Target:  5'- gGGCAGCcaGCAGAC-CGAGuuguGCGCCGa -3'
miRNA:   3'- -CUGUCGc-CGUCUGuGUUUgu--CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 7084 0.66 0.896946
Target:  5'- cGGCcuGUGcGCAGACAU--GCAGCGCg- -3'
miRNA:   3'- -CUGu-CGC-CGUCUGUGuuUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 42739 0.66 0.896273
Target:  5'- cGCGcGCGGC-GACGCGcauggugAGCGGCGCg- -3'
miRNA:   3'- cUGU-CGCCGuCUGUGU-------UUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 116918 0.66 0.894921
Target:  5'- cGCGGCGGguGGCGCAcaauGACGuagagcauccacacGCGCg- -3'
miRNA:   3'- cUGUCGCCguCUGUGU----UUGU--------------CGCGgu -5'
6847 5' -55.2 NC_001875.2 + 76930 0.66 0.890112
Target:  5'- cGAgAGCGGCuccagcgaGGACGaAGAC-GCGCCGu -3'
miRNA:   3'- -CUgUCGCCG--------UCUGUgUUUGuCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 113791 0.66 0.890112
Target:  5'- aGCGGCGGCAGuACGCcucguuGAACucgcccuuaaAGCGCUc -3'
miRNA:   3'- cUGUCGCCGUC-UGUG------UUUG----------UCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 65701 0.66 0.890112
Target:  5'- cACGcCGGCcGACcacuguuccGCGGGCGGCGCCGc -3'
miRNA:   3'- cUGUcGCCGuCUG---------UGUUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 99377 0.66 0.890112
Target:  5'- --aAGUGGCcaaAGcgccGCACcGGCGGCGCCAg -3'
miRNA:   3'- cugUCGCCG---UC----UGUGuUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 127910 0.66 0.890112
Target:  5'- uGCAGCuGCAGuuucuCGCAAAgcuCAGCGCgCAg -3'
miRNA:   3'- cUGUCGcCGUCu----GUGUUU---GUCGCG-GU- -5'
6847 5' -55.2 NC_001875.2 + 102739 0.66 0.890112
Target:  5'- cGACGGCGGUcugaaGGAUugGgaacccGACGacGCGCCGu -3'
miRNA:   3'- -CUGUCGCCG-----UCUGugU------UUGU--CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 101640 0.66 0.883038
Target:  5'- cACAaCGGCcgucGCgGCGAACGGCGCCAa -3'
miRNA:   3'- cUGUcGCCGuc--UG-UGUUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 42859 0.66 0.883038
Target:  5'- cGGCGcGCcGCAGGCGCAGGuccgcCAGCGCa- -3'
miRNA:   3'- -CUGU-CGcCGUCUGUGUUU-----GUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 113386 0.66 0.883038
Target:  5'- -uCAGCGGC--GCGCGAuucGC-GCGCCAc -3'
miRNA:   3'- cuGUCGCCGucUGUGUU---UGuCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 59722 0.66 0.883038
Target:  5'- aGCAGCGGCucgcGCugGAGCAGUGguUCAg -3'
miRNA:   3'- cUGUCGCCGuc--UGugUUUGUCGC--GGU- -5'
6847 5' -55.2 NC_001875.2 + 64704 0.66 0.883038
Target:  5'- aGACAGCcGCAG-CAac-ACGGCGCUg -3'
miRNA:   3'- -CUGUCGcCGUCuGUguuUGUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 4779 0.66 0.883038
Target:  5'- uGGCcGCGGCuuuGACuauuACAGcCGGCGCCc -3'
miRNA:   3'- -CUGuCGCCGu--CUG----UGUUuGUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 94135 0.66 0.883038
Target:  5'- aGCAGCGacaaCGGGCACAcaauCAGCGUCu -3'
miRNA:   3'- cUGUCGCc---GUCUGUGUuu--GUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 100160 0.66 0.883038
Target:  5'- cGCGGUgaucacGGUGGGCGCGAGCGgcaugaaaagcGCGCCGu -3'
miRNA:   3'- cUGUCG------CCGUCUGUGUUUGU-----------CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 33596 0.66 0.875728
Target:  5'- cGAC-GUGGCGGuugaACACGGGCAGCaguccgucggccGCCGg -3'
miRNA:   3'- -CUGuCGCCGUC----UGUGUUUGUCG------------CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.