miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6859 3' -47.7 NC_001875.2 + 7029 0.66 0.999535
Target:  5'- aCGUaagcGAGGUGGcCGCGCGCUUgUCGGc -3'
miRNA:   3'- -GCGgu--UUUUAUC-GUGCGCGAA-AGCUc -5'
6859 3' -47.7 NC_001875.2 + 46144 0.66 0.999535
Target:  5'- aGUCGAucgcGGCGCGCaaGCUggUCGAGu -3'
miRNA:   3'- gCGGUUuuuaUCGUGCG--CGAa-AGCUC- -5'
6859 3' -47.7 NC_001875.2 + 98874 0.66 0.999535
Target:  5'- gCGCUAAu-GUGcGCGgGCGCcgUUUCGGGa -3'
miRNA:   3'- -GCGGUUuuUAU-CGUgCGCG--AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 84212 0.66 0.999535
Target:  5'- uGCCGGuAGUAgggccGCGCGCGCUcgUCcAGg -3'
miRNA:   3'- gCGGUUuUUAU-----CGUGCGCGAa-AGcUC- -5'
6859 3' -47.7 NC_001875.2 + 130634 0.66 0.999535
Target:  5'- aCGCCGAucaggAGCAgGCGCaugCGGu -3'
miRNA:   3'- -GCGGUUuuua-UCGUgCGCGaaaGCUc -5'
6859 3' -47.7 NC_001875.2 + 19039 0.66 0.999535
Target:  5'- uGCuCGAuuauGUGGC-CGCGC--UCGAGg -3'
miRNA:   3'- gCG-GUUuu--UAUCGuGCGCGaaAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 74661 0.66 0.999535
Target:  5'- gGCCGGGGcugGGCGagcUGCGCUUUCa-- -3'
miRNA:   3'- gCGGUUUUua-UCGU---GCGCGAAAGcuc -5'
6859 3' -47.7 NC_001875.2 + 89001 0.66 0.999535
Target:  5'- gCGCCGGAuuu-GCGCGCuacGCgugCGAGc -3'
miRNA:   3'- -GCGGUUUuuauCGUGCG---CGaaaGCUC- -5'
6859 3' -47.7 NC_001875.2 + 55734 0.66 0.999417
Target:  5'- gGCCGAGcGUGGcCAUGCgGCccucUUCGGGg -3'
miRNA:   3'- gCGGUUUuUAUC-GUGCG-CGa---AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 6967 0.66 0.999417
Target:  5'- uCGCCAc----GGCGCGCuGCUUgacagCGGGc -3'
miRNA:   3'- -GCGGUuuuuaUCGUGCG-CGAAa----GCUC- -5'
6859 3' -47.7 NC_001875.2 + 122002 0.66 0.999417
Target:  5'- cCGCCAgcGAAAUGa---GCGCUUUUGGGu -3'
miRNA:   3'- -GCGGU--UUUUAUcgugCGCGAAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 117972 0.66 0.999417
Target:  5'- gCGCCAAAAuggccuguuGCGCGCGCgcaUUUGu- -3'
miRNA:   3'- -GCGGUUUUuau------CGUGCGCGa--AAGCuc -5'
6859 3' -47.7 NC_001875.2 + 90705 0.66 0.999417
Target:  5'- aCGUUAAAGuuugugauUGGCACGCGCUggcacaCGAc -3'
miRNA:   3'- -GCGGUUUUu-------AUCGUGCGCGAaa----GCUc -5'
6859 3' -47.7 NC_001875.2 + 37158 0.66 0.999404
Target:  5'- uCGCCGGGuuccAGCacccgugccGCGCGCUggcccauuucaugUUCGAGg -3'
miRNA:   3'- -GCGGUUUuua-UCG---------UGCGCGA-------------AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 45663 0.66 0.999274
Target:  5'- aGCCAuuacuugcAAAAccuGCGCGgGCUUUUGAa -3'
miRNA:   3'- gCGGU--------UUUUau-CGUGCgCGAAAGCUc -5'
6859 3' -47.7 NC_001875.2 + 62336 0.66 0.999274
Target:  5'- uCGCCAGuuuuAAgugGGCGCGgCGCcagUUUGGGu -3'
miRNA:   3'- -GCGGUUu---UUa--UCGUGC-GCGa--AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 18679 0.66 0.999274
Target:  5'- uGCCAuaucAAAcGGCGCGCGCgc-CGGc -3'
miRNA:   3'- gCGGUu---UUUaUCGUGCGCGaaaGCUc -5'
6859 3' -47.7 NC_001875.2 + 65074 0.66 0.999274
Target:  5'- gCGCCAAcacgcugGGCaaggACGCGCUcaaCGAGg -3'
miRNA:   3'- -GCGGUUuuua---UCG----UGCGCGAaa-GCUC- -5'
6859 3' -47.7 NC_001875.2 + 9728 0.66 0.999274
Target:  5'- gCGCCcGAAgcGUGGCACGUGU---UGAGc -3'
miRNA:   3'- -GCGGuUUU--UAUCGUGCGCGaaaGCUC- -5'
6859 3' -47.7 NC_001875.2 + 49468 0.66 0.999242
Target:  5'- gCGCCGugguuccGCGCGCGCc--CGAGu -3'
miRNA:   3'- -GCGGUuuuuau-CGUGCGCGaaaGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.