miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 5' -60.1 NC_001875.2 + 52543 0.66 0.741704
Target:  5'- aGCAC-GCGCCaGUaugCGcGCacGCGCGCCa -3'
miRNA:   3'- -UGUGcCGCGGcCAaa-GC-CG--CGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 40470 0.66 0.741704
Target:  5'- gGCGuggUGGUGCCGGgcgucaugUCGcGCaacgGCACGCUg -3'
miRNA:   3'- -UGU---GCCGCGGCCaa------AGC-CG----CGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 40648 0.66 0.741704
Target:  5'- gGCGCGcacGCGCCGGcuguugcgCGGCGaCAUuCCg -3'
miRNA:   3'- -UGUGC---CGCGGCCaaa-----GCCGC-GUGcGG- -5'
6860 5' -60.1 NC_001875.2 + 40866 0.66 0.741704
Target:  5'- cGCACcgcgGGCGCCaucc-UGGUGCACGCg -3'
miRNA:   3'- -UGUG----CCGCGGccaaaGCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 95738 0.66 0.741704
Target:  5'- -aGCGGCGCCGccg-CcGCGUGCuGCCg -3'
miRNA:   3'- ugUGCCGCGGCcaaaGcCGCGUG-CGG- -5'
6860 5' -60.1 NC_001875.2 + 29780 0.66 0.741704
Target:  5'- gUACGGcCGCgGGUggacgGGCGUgucaggcuACGCCg -3'
miRNA:   3'- uGUGCC-GCGgCCAaag--CCGCG--------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 6978 0.66 0.741704
Target:  5'- uGCAgGGCgcaaagcgGCCGGUgUgGGUgugcuGCugGCCg -3'
miRNA:   3'- -UGUgCCG--------CGGCCAaAgCCG-----CGugCGG- -5'
6860 5' -60.1 NC_001875.2 + 9305 0.66 0.741704
Target:  5'- uGCACuGcGCGCCGGacgcaaUCGGCGaagcUGCCc -3'
miRNA:   3'- -UGUG-C-CGCGGCCaa----AGCCGCgu--GCGG- -5'
6860 5' -60.1 NC_001875.2 + 85781 0.66 0.740755
Target:  5'- cCGuCGGCGUuuGUUUuuguccauaagaaCGGCGCGCGCg -3'
miRNA:   3'- uGU-GCCGCGgcCAAA-------------GCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 21895 0.66 0.740755
Target:  5'- uACACGucGCGCugcuccgCGGUgagCGGCGCGUGCa -3'
miRNA:   3'- -UGUGC--CGCG-------GCCAaa-GCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 106459 0.66 0.737903
Target:  5'- cGCAauCGGCGCCGGgccaacguugaCGGCuuugaaaaacaGCuCGCCg -3'
miRNA:   3'- -UGU--GCCGCGGCCaaa--------GCCG-----------CGuGCGG- -5'
6860 5' -60.1 NC_001875.2 + 98371 0.66 0.735997
Target:  5'- cGCGCGGCGCgccacuuucgaccacUGGc--CGGC-CGCGCUg -3'
miRNA:   3'- -UGUGCCGCG---------------GCCaaaGCCGcGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 7049 0.66 0.732176
Target:  5'- cGCuuguCGGC-CUGGUUccgcugCGGCG-ACGCCa -3'
miRNA:   3'- -UGu---GCCGcGGCCAAa-----GCCGCgUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 20036 0.66 0.732176
Target:  5'- aGCAgccaGGCGCCG---UCGGCcgcguGCACcGCCg -3'
miRNA:   3'- -UGUg---CCGCGGCcaaAGCCG-----CGUG-CGG- -5'
6860 5' -60.1 NC_001875.2 + 61905 0.66 0.732176
Target:  5'- gACAC-GCGCCGuGUcaCGGCGgaaACGCg -3'
miRNA:   3'- -UGUGcCGCGGC-CAaaGCCGCg--UGCGg -5'
6860 5' -60.1 NC_001875.2 + 76896 0.66 0.732176
Target:  5'- aACGCGcGCGCaaaGGgg-CGGCGCccaGCg -3'
miRNA:   3'- -UGUGC-CGCGg--CCaaaGCCGCGug-CGg -5'
6860 5' -60.1 NC_001875.2 + 49536 0.66 0.732176
Target:  5'- uCGCuGGUGCUGGacUUGGgGCccgACGCCa -3'
miRNA:   3'- uGUG-CCGCGGCCaaAGCCgCG---UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 29803 0.66 0.732176
Target:  5'- uGCG-GGCGCUGG---CGGCGCAUggGUCa -3'
miRNA:   3'- -UGUgCCGCGGCCaaaGCCGCGUG--CGG- -5'
6860 5' -60.1 NC_001875.2 + 109995 0.66 0.732176
Target:  5'- cGCGCGGuCGgUGGcgUUGacGCGCGCGCa -3'
miRNA:   3'- -UGUGCC-GCgGCCaaAGC--CGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 124899 0.66 0.732176
Target:  5'- ---aGGCGCgGGUUUUGuuguaGCGCGCGguCCa -3'
miRNA:   3'- ugugCCGCGgCCAAAGC-----CGCGUGC--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.