miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6863 3' -56 NC_001875.2 + 118443 0.66 0.891157
Target:  5'- gGGCCc-GUGCAAGcGCGCCUGgugcCGUG-Cg -3'
miRNA:   3'- -CCGGcaCGCGUUU-CGCGGAU----GCACuG- -5'
6863 3' -56 NC_001875.2 + 48227 0.66 0.891157
Target:  5'- uGCUG-GCGCGGAacGCGCCgaacacCGUGAa -3'
miRNA:   3'- cCGGCaCGCGUUU--CGCGGau----GCACUg -5'
6863 3' -56 NC_001875.2 + 37978 0.66 0.891157
Target:  5'- cGGCC-UGCGCGcucAGCGCCgacaaccgUugGUG-Ca -3'
miRNA:   3'- -CCGGcACGCGUu--UCGCGG--------AugCACuG- -5'
6863 3' -56 NC_001875.2 + 54098 0.66 0.891157
Target:  5'- gGGUCGaUGCGCugccAGCGCacgUACaUGACa -3'
miRNA:   3'- -CCGGC-ACGCGuu--UCGCGg--AUGcACUG- -5'
6863 3' -56 NC_001875.2 + 119056 0.66 0.891157
Target:  5'- cGG-CGUGCGCAugugcgcGGCGCCc-CGgcugGACa -3'
miRNA:   3'- -CCgGCACGCGUu------UCGCGGauGCa---CUG- -5'
6863 3' -56 NC_001875.2 + 77847 0.66 0.891157
Target:  5'- aGGCCGUGCGCGAccaG-CUGCGgcaACa -3'
miRNA:   3'- -CCGGCACGCGUUucgCgGAUGCac-UG- -5'
6863 3' -56 NC_001875.2 + 111725 0.66 0.887039
Target:  5'- cGCCGacgUGCGCGAacaccugcgaauuggGGCGCCcaucACGUG-Cg -3'
miRNA:   3'- cCGGC---ACGCGUU---------------UCGCGGa---UGCACuG- -5'
6863 3' -56 NC_001875.2 + 111896 0.66 0.884246
Target:  5'- cGGaCCGUGCGCGccG-GCCgcucCGUGuACg -3'
miRNA:   3'- -CC-GGCACGCGUuuCgCGGau--GCAC-UG- -5'
6863 3' -56 NC_001875.2 + 81357 0.66 0.884246
Target:  5'- uGCCGcGCGCAc-GCGCCggccGCGUcGCu -3'
miRNA:   3'- cCGGCaCGCGUuuCGCGGa---UGCAcUG- -5'
6863 3' -56 NC_001875.2 + 59489 0.66 0.884246
Target:  5'- cGGCCGagacaaGCGCGucGAGUGCCccAUGUGcCg -3'
miRNA:   3'- -CCGGCa-----CGCGU--UUCGCGGa-UGCACuG- -5'
6863 3' -56 NC_001875.2 + 67140 0.66 0.884246
Target:  5'- cGCCGUGuUGCugcGGCuGUCUGCGcggGACa -3'
miRNA:   3'- cCGGCAC-GCGuu-UCG-CGGAUGCa--CUG- -5'
6863 3' -56 NC_001875.2 + 29308 0.66 0.884246
Target:  5'- uGUCGUGCGCGuuguuGCGCacaaACG-GACa -3'
miRNA:   3'- cCGGCACGCGUuu---CGCGga--UGCaCUG- -5'
6863 3' -56 NC_001875.2 + 21262 0.66 0.884246
Target:  5'- aGGCgCGcGCGCGgcGCGgCUACGagcacGACa -3'
miRNA:   3'- -CCG-GCaCGCGUuuCGCgGAUGCa----CUG- -5'
6863 3' -56 NC_001875.2 + 126952 0.66 0.884246
Target:  5'- aGCUGcgGCGCGAGuuaaauaguuuGCGCCgcaGCGUGcACg -3'
miRNA:   3'- cCGGCa-CGCGUUU-----------CGCGGa--UGCAC-UG- -5'
6863 3' -56 NC_001875.2 + 63132 0.66 0.884246
Target:  5'- cGGCCGggcGCGCGGccGGCGCaCggguccACG-GGCa -3'
miRNA:   3'- -CCGGCa--CGCGUU--UCGCG-Ga-----UGCaCUG- -5'
6863 3' -56 NC_001875.2 + 34760 0.66 0.884246
Target:  5'- aGCCGUGCGUGuucaauguAAGUGCCgcauuCGUcGCa -3'
miRNA:   3'- cCGGCACGCGU--------UUCGCGGau---GCAcUG- -5'
6863 3' -56 NC_001875.2 + 89116 0.66 0.884246
Target:  5'- cGCCGcGCGCGAcgaccggguGCGCCUuGCGU-ACg -3'
miRNA:   3'- cCGGCaCGCGUUu--------CGCGGA-UGCAcUG- -5'
6863 3' -56 NC_001875.2 + 29933 0.66 0.884246
Target:  5'- cGCCGc-CGUAAAGCGgCCUACGUu-- -3'
miRNA:   3'- cCGGCacGCGUUUCGC-GGAUGCAcug -5'
6863 3' -56 NC_001875.2 + 94258 0.66 0.884246
Target:  5'- cGGCCGcgGCGCuc-GCGCCgGCGc--- -3'
miRNA:   3'- -CCGGCa-CGCGuuuCGCGGaUGCacug -5'
6863 3' -56 NC_001875.2 + 104723 0.66 0.884246
Target:  5'- gGGCUGUG-GCAAuguGCGUgaACGgGACg -3'
miRNA:   3'- -CCGGCACgCGUUu--CGCGgaUGCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.