miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6864 3' -65.1 NC_001875.2 + 9020 0.66 0.488203
Target:  5'- cCACCU-CGGaCGCcuugcguuuggaGCcGCCGGCCGCg -3'
miRNA:   3'- aGUGGAcGUC-GCG------------CGcCGGCCGGCGg -5'
6864 3' -65.1 NC_001875.2 + 60678 0.66 0.488203
Target:  5'- gCGCUggcgGCAGUuucuguaaugcccaaCGCGGCCgcgcugaGGCCGCCc -3'
miRNA:   3'- aGUGGa---CGUCGc--------------GCGCCGG-------CCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 121451 0.66 0.488203
Target:  5'- gCGCCa-CGGCGCgGCGGCguucaaaguuuuCGGCCagGCCg -3'
miRNA:   3'- aGUGGacGUCGCG-CGCCG------------GCCGG--CGG- -5'
6864 3' -65.1 NC_001875.2 + 43101 0.66 0.488203
Target:  5'- cUCGCC-GCAGUuuUGCGGCagguugGaGCCGCCg -3'
miRNA:   3'- -AGUGGaCGUCGc-GCGCCGg-----C-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 20682 0.66 0.487296
Target:  5'- aUCGCUaaGCAGCGcCGUGacaccaaGCC-GCCGCCa -3'
miRNA:   3'- -AGUGGa-CGUCGC-GCGC-------CGGcCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 47873 0.66 0.487296
Target:  5'- cCGCCUGUuuaucgacuuGGUguacuccgaguucGCGCGGUgGuGCUGCCg -3'
miRNA:   3'- aGUGGACG----------UCG-------------CGCGCCGgC-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 50506 0.66 0.482772
Target:  5'- gCACCaGCGcGcCGCGCGGCaCgaugacgaggaggagGcGCCGCCg -3'
miRNA:   3'- aGUGGaCGU-C-GCGCGCCG-G---------------C-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 93090 0.66 0.48187
Target:  5'- gCGCCUGCAGCucaauuuGCggguuccaguGCGGCUccagcaugaugauguGGuuGCCg -3'
miRNA:   3'- aGUGGACGUCG-------CG----------CGCCGG---------------CCggCGG- -5'
6864 3' -65.1 NC_001875.2 + 59933 0.66 0.479168
Target:  5'- cUCAUCagUGCcGUGuCGCGGCUGGUCGaCg -3'
miRNA:   3'- -AGUGG--ACGuCGC-GCGCCGGCCGGCgG- -5'
6864 3' -65.1 NC_001875.2 + 85871 0.66 0.479168
Target:  5'- uUCGCC-GCAGCG-GCGGCUcuGcGCuauCGCCu -3'
miRNA:   3'- -AGUGGaCGUCGCgCGCCGG--C-CG---GCGG- -5'
6864 3' -65.1 NC_001875.2 + 110123 0.66 0.479168
Target:  5'- aCGCgCUGUGGaaccuGCuGCGGCUGGaCCGCa -3'
miRNA:   3'- aGUG-GACGUCg----CG-CGCCGGCC-GGCGg -5'
6864 3' -65.1 NC_001875.2 + 121175 0.66 0.479168
Target:  5'- gCGCCUGCGccaaGUGCaGUCcGCCGCCc -3'
miRNA:   3'- aGUGGACGUcg--CGCGcCGGcCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 98490 0.66 0.479168
Target:  5'- ---aCUGCcGCGUGCGuGaUUGGCUGCCg -3'
miRNA:   3'- agugGACGuCGCGCGC-C-GGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 39178 0.66 0.479168
Target:  5'- -gGCCgGCGGuUGCGUGGCguuuaCGGUgCGCCg -3'
miRNA:   3'- agUGGaCGUC-GCGCGCCG-----GCCG-GCGG- -5'
6864 3' -65.1 NC_001875.2 + 90039 0.66 0.479168
Target:  5'- gCGCC---GGCGCGCGuGCCGGCgGa- -3'
miRNA:   3'- aGUGGacgUCGCGCGC-CGGCCGgCgg -5'
6864 3' -65.1 NC_001875.2 + 80474 0.66 0.479168
Target:  5'- aCGCCUGCAGCaaauCGgGGUcguCGGaucgguuaaacuCCGCCa -3'
miRNA:   3'- aGUGGACGUCGc---GCgCCG---GCC------------GGCGG- -5'
6864 3' -65.1 NC_001875.2 + 98912 0.66 0.479168
Target:  5'- gCGCC-GUAGCuCGCGGCgcCGGuuGCg -3'
miRNA:   3'- aGUGGaCGUCGcGCGCCG--GCCggCGg -5'
6864 3' -65.1 NC_001875.2 + 98152 0.66 0.478268
Target:  5'- aUCAgCggGCGGCGCacGUcgGGCCGuuuguuuuaccacGCCGCCg -3'
miRNA:   3'- -AGUgGa-CGUCGCG--CG--CCGGC-------------CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 37364 0.66 0.476473
Target:  5'- gCGCUcgUGCGaacGCGCGC-GCCGcugcaguuuccgcuGCCGCCg -3'
miRNA:   3'- aGUGG--ACGU---CGCGCGcCGGC--------------CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 74819 0.66 0.476473
Target:  5'- gCGCCcaGCGGCGCGUuacacuccauugacGGCC-GCUGCUc -3'
miRNA:   3'- aGUGGa-CGUCGCGCG--------------CCGGcCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.