Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6879 | 3' | -60.1 | NC_001875.2 | + | 83324 | 0.66 | 0.708634 |
Target: 5'- -gGGGCGCGcgccGGGCGGCGCgccaaaauAGUCc-- -3' miRNA: 3'- aaCCCGCGCu---CUUGCCGCG--------UCAGccg -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 34901 | 0.66 | 0.708634 |
Target: 5'- -cGaGCGCGAGAucaaGGCGCgccaguuuuuugGGUgCGGCg -3' miRNA: 3'- aaCcCGCGCUCUug--CCGCG------------UCA-GCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 102079 | 0.66 | 0.708634 |
Target: 5'- uUUGGG-GCGAGcacaguAACaGCGUcaguGUCGGCa -3' miRNA: 3'- -AACCCgCGCUC------UUGcCGCGu---CAGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 3164 | 0.66 | 0.708634 |
Target: 5'- -cGGGCgGCGAGua-GGUG-AGcCGGCg -3' miRNA: 3'- aaCCCG-CGCUCuugCCGCgUCaGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 131749 | 0.66 | 0.708634 |
Target: 5'- aUUGGGCcggcgGCGGaucGGGCGGCGCGucaUUGGUg -3' miRNA: 3'- -AACCCG-----CGCU---CUUGCCGCGUc--AGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 77013 | 0.66 | 0.708634 |
Target: 5'- -cGGGCGCGuuugaGGUGUucgGGcUCGGCa -3' miRNA: 3'- aaCCCGCGCucuugCCGCG---UC-AGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 79867 | 0.66 | 0.708634 |
Target: 5'- -gGuGGCGCGuGGuccACGcGCGCGcGUgCGGCa -3' miRNA: 3'- aaC-CCGCGCuCU---UGC-CGCGU-CA-GCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 31979 | 0.66 | 0.698729 |
Target: 5'- gUGuGGCGCGcGuACGGCcgguuugugaGCGG-CGGCg -3' miRNA: 3'- aAC-CCGCGCuCuUGCCG----------CGUCaGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 103940 | 0.66 | 0.698729 |
Target: 5'- -cGGGCuGCGAcGGCGGCcuguuGCAcaCGGCa -3' miRNA: 3'- aaCCCG-CGCUcUUGCCG-----CGUcaGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 10440 | 0.66 | 0.698729 |
Target: 5'- --uGGCGCagcagcuuuGAcGCGGCGCGG-CGGCg -3' miRNA: 3'- aacCCGCGcu-------CU-UGCCGCGUCaGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 66319 | 0.66 | 0.691762 |
Target: 5'- cUGGGCGUccgcaacGAGAccACcuucaacgacuggaaGGCGCgcauccAGUCGGCg -3' miRNA: 3'- aACCCGCG-------CUCU--UG---------------CCGCG------UCAGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 2672 | 0.66 | 0.688769 |
Target: 5'- -gGcGGCGCcuGGGGcaacuGCGGCGCc-UCGGCa -3' miRNA: 3'- aaC-CCGCG--CUCU-----UGCCGCGucAGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 22582 | 0.66 | 0.688769 |
Target: 5'- -cGGGCGCGGcgcguUGGC-CGGcCGGCu -3' miRNA: 3'- aaCCCGCGCUcuu--GCCGcGUCaGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 88158 | 0.66 | 0.688769 |
Target: 5'- gUGGGCGCacgacGGcaAACGGUGCauGGUCgaGGCg -3' miRNA: 3'- aACCCGCGc----UC--UUGCCGCG--UCAG--CCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 92739 | 0.66 | 0.688769 |
Target: 5'- aUGGaGCGCG-GAACuGCaGC-GUUGGCa -3' miRNA: 3'- aACC-CGCGCuCUUGcCG-CGuCAGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 66307 | 0.66 | 0.688769 |
Target: 5'- -cGcGGCcgGCGAGuuGAUGGCGUGGgCGGCc -3' miRNA: 3'- aaC-CCG--CGCUC--UUGCCGCGUCaGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 89484 | 0.66 | 0.68777 |
Target: 5'- gUGGcgcccucGCGCcgcaaccgcuuGGGAAaGGUGCAGUUGGCg -3' miRNA: 3'- aACC-------CGCG-----------CUCUUgCCGCGUCAGCCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 21262 | 0.66 | 0.678763 |
Target: 5'- --aGGCGCGcGcGCGGCGCGGcuaCGaGCa -3' miRNA: 3'- aacCCGCGCuCuUGCCGCGUCa--GC-CG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 18434 | 0.66 | 0.678763 |
Target: 5'- --cGGCGCGA----GGCGCGGUCcGCg -3' miRNA: 3'- aacCCGCGCUcuugCCGCGUCAGcCG- -5' |
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6879 | 3' | -60.1 | NC_001875.2 | + | 69239 | 0.66 | 0.678763 |
Target: 5'- --cGGCgGCGucGAACGGCGCgcuGGgccgCGGCu -3' miRNA: 3'- aacCCG-CGCu-CUUGCCGCG---UCa---GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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