miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 3' -59.6 NC_001875.2 + 4535 0.66 0.726138
Target:  5'- cGCcgGCUGcgguuccugcgguuUGgGgGCCGCCAGCAa- -3'
miRNA:   3'- -CGuaCGACu-------------GCgCgCGGCGGUCGUga -5'
6883 3' -59.6 NC_001875.2 + 13906 0.66 0.722208
Target:  5'- ---cGC-GGCgGCGCGCaCGCCGGC-CUg -3'
miRNA:   3'- cguaCGaCUG-CGCGCG-GCGGUCGuGA- -5'
6883 3' -59.6 NC_001875.2 + 42293 0.66 0.722208
Target:  5'- gGCAgGCUGcGCGUGCGuauagacgaucCCGCCuaucGGCGCg -3'
miRNA:   3'- -CGUaCGAC-UGCGCGC-----------GGCGG----UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 39668 0.66 0.722208
Target:  5'- gGCcgGC-GGCGCGCgGCgGCgAGCuGCUa -3'
miRNA:   3'- -CGuaCGaCUGCGCG-CGgCGgUCG-UGA- -5'
6883 3' -59.6 NC_001875.2 + 119524 0.66 0.722208
Target:  5'- ---cGCUGGCcggGCGCGuuGaCCAcGCACa -3'
miRNA:   3'- cguaCGACUG---CGCGCggC-GGU-CGUGa -5'
6883 3' -59.6 NC_001875.2 + 6944 0.66 0.722208
Target:  5'- cGCGUcGU--GCGUGCGCCGCgacaucgccaCGGCGCg -3'
miRNA:   3'- -CGUA-CGacUGCGCGCGGCG----------GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 71540 0.66 0.722208
Target:  5'- ---cGCUG-CGaCGCGUCGCCuGCAgUg -3'
miRNA:   3'- cguaCGACuGC-GCGCGGCGGuCGUgA- -5'
6883 3' -59.6 NC_001875.2 + 40852 0.66 0.722208
Target:  5'- ---cGCUcgccaaGACGCGCaCCGCgGGCGCc -3'
miRNA:   3'- cguaCGA------CUGCGCGcGGCGgUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 43649 0.66 0.722208
Target:  5'- ---cGUUG-UGCGCGCCGUUGGUGCa -3'
miRNA:   3'- cguaCGACuGCGCGCGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 55317 0.66 0.722208
Target:  5'- gGCAgugGCgcgcgacggUGAUGaCGCGCCGCUucgggGGCGCc -3'
miRNA:   3'- -CGUa--CG---------ACUGC-GCGCGGCGG-----UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 36544 0.66 0.722208
Target:  5'- ---cGCUGGCGCGCaccguccCCGUguGCAUa -3'
miRNA:   3'- cguaCGACUGCGCGc------GGCGguCGUGa -5'
6883 3' -59.6 NC_001875.2 + 99048 0.66 0.722208
Target:  5'- aGCuUGCcGGCGCgGCGcCCGCCcacgccGCGCg -3'
miRNA:   3'- -CGuACGaCUGCG-CGC-GGCGGu-----CGUGa -5'
6883 3' -59.6 NC_001875.2 + 58376 0.66 0.71233
Target:  5'- cGCGuauuuUGCaaACGCGCGUCGUcaaCAGCGCa -3'
miRNA:   3'- -CGU-----ACGacUGCGCGCGGCG---GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 74424 0.66 0.71233
Target:  5'- aCAUGCaGuuGCaCGCCGCCuGCAUa -3'
miRNA:   3'- cGUACGaCugCGcGCGGCGGuCGUGa -5'
6883 3' -59.6 NC_001875.2 + 128178 0.66 0.71233
Target:  5'- ---gGUUGGCGCGCaagCGCgCAGCACa -3'
miRNA:   3'- cguaCGACUGCGCGcg-GCG-GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 18692 0.66 0.71233
Target:  5'- ---gGC--GCGCGCGCCGgCguGCACa -3'
miRNA:   3'- cguaCGacUGCGCGCGGC-GguCGUGa -5'
6883 3' -59.6 NC_001875.2 + 124868 0.66 0.71233
Target:  5'- uGCccGCUGuucaagcaGCGCGCCGUggcgaugucgCGGCGCa -3'
miRNA:   3'- -CGuaCGACug------CGCGCGGCG----------GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 90906 0.66 0.71233
Target:  5'- gGCAUGUUGACGgGCacGCaGCCuGCGgUg -3'
miRNA:   3'- -CGUACGACUGCgCG--CGgCGGuCGUgA- -5'
6883 3' -59.6 NC_001875.2 + 85235 0.66 0.71233
Target:  5'- cGCAUGUcGACGaGCGCggguuccgCGCuCGGCGCg -3'
miRNA:   3'- -CGUACGaCUGCgCGCG--------GCG-GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 81414 0.66 0.71233
Target:  5'- --uUGCUGACGUGUuccaGCaGCCuGCGCg -3'
miRNA:   3'- cguACGACUGCGCG----CGgCGGuCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.