miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6888 5' -60.9 NC_001875.2 + 128001 0.66 0.675236
Target:  5'- uGUUGgaGGCu-GCGGcCGCGCCgGcguGCGCCg -3'
miRNA:   3'- -CAAC--CCGucCGCC-GCGCGGgU---UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 79134 0.66 0.675236
Target:  5'- --cGGGCGccGCGGCGgGCUCGuuuGCCa -3'
miRNA:   3'- caaCCCGUc-CGCCGCgCGGGUug-UGG- -5'
6888 5' -60.9 NC_001875.2 + 63256 0.66 0.675236
Target:  5'- --cGGGCucGGCGGCcagcgGCGCCaCGcgguGCGCg -3'
miRNA:   3'- caaCCCGu-CCGCCG-----CGCGG-GU----UGUGg -5'
6888 5' -60.9 NC_001875.2 + 60857 0.66 0.675236
Target:  5'- -cUGGGCguuuccAGGCucguGGCG-GCCCGGCcguCCa -3'
miRNA:   3'- caACCCG------UCCG----CCGCgCGGGUUGu--GG- -5'
6888 5' -60.9 NC_001875.2 + 113681 0.66 0.675236
Target:  5'- --aGuGGC-GGCGucGCGCGCgCC-GCACCa -3'
miRNA:   3'- caaC-CCGuCCGC--CGCGCG-GGuUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 73786 0.66 0.675236
Target:  5'- gGUUGuGGC-GGCGGCG-GCUgGaacggcagcGCGCCg -3'
miRNA:   3'- -CAAC-CCGuCCGCCGCgCGGgU---------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 9360 0.66 0.674239
Target:  5'- cUUGGGCaucgcaaAGGUGcuGCGCGCgCCGcaGCCa -3'
miRNA:   3'- cAACCCG-------UCCGC--CGCGCG-GGUugUGG- -5'
6888 5' -60.9 NC_001875.2 + 98355 0.66 0.674239
Target:  5'- gGUUGGcGCAccccagcGcGCGGCGCGCCacuuuCgACCa -3'
miRNA:   3'- -CAACC-CGU-------C-CGCCGCGCGGguu--G-UGG- -5'
6888 5' -60.9 NC_001875.2 + 62387 0.66 0.665244
Target:  5'- cGUUGuuuaGCGuGGcCGGCGCGCa-AACGCCg -3'
miRNA:   3'- -CAACc---CGU-CC-GCCGCGCGggUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 67929 0.66 0.665244
Target:  5'- --cGGGUucaugauGCGGCgGCGCCaCGGCGCg -3'
miRNA:   3'- caaCCCGuc-----CGCCG-CGCGG-GUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 118311 0.66 0.665244
Target:  5'- --aGGGUcgAGGCGGC-CGgCCGcGCGCUg -3'
miRNA:   3'- caaCCCG--UCCGCCGcGCgGGU-UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 12967 0.66 0.665244
Target:  5'- --cGcGGCGGGC-GUGgGCUCcGCGCCg -3'
miRNA:   3'- caaC-CCGUCCGcCGCgCGGGuUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 45234 0.66 0.665244
Target:  5'- --cGaaCAGGCGGCGCGUcgCCuugucguACACCa -3'
miRNA:   3'- caaCccGUCCGCCGCGCG--GGu------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 32078 0.66 0.664244
Target:  5'- -aUGGcgcucguGCAGGCuuGCGCGUCaCAGCACg -3'
miRNA:   3'- caACC-------CGUCCGc-CGCGCGG-GUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 108752 0.66 0.664244
Target:  5'- --gGGGCAGcugcacGCGGCGCggguugccgguuuGUCCAGgGCUa -3'
miRNA:   3'- caaCCCGUC------CGCCGCG-------------CGGGUUgUGG- -5'
6888 5' -60.9 NC_001875.2 + 95016 0.66 0.664244
Target:  5'- -gUGGcGCGGGCgcgcaacugccgcGGCGCGUaacgcGCACCg -3'
miRNA:   3'- caACC-CGUCCG-------------CCGCGCGggu--UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 40918 0.66 0.655226
Target:  5'- -cUGGccaucaccaccGCAGGCuGCGUGCCCGucaacAUGCCc -3'
miRNA:   3'- caACC-----------CGUCCGcCGCGCGGGU-----UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 67255 0.66 0.655226
Target:  5'- cGUUGcagaAGGUGGCGCGCUUGAUgaACCa -3'
miRNA:   3'- -CAACccg-UCCGCCGCGCGGGUUG--UGG- -5'
6888 5' -60.9 NC_001875.2 + 102993 0.66 0.655226
Target:  5'- --cGGGCAcguGGUGGCGUGCggCAaguGCGCUg -3'
miRNA:   3'- caaCCCGU---CCGCCGCGCGg-GU---UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 17095 0.66 0.655226
Target:  5'- --cGGGCAaGCcGCGCGCCacuGGCgGCCg -3'
miRNA:   3'- caaCCCGUcCGcCGCGCGGg--UUG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.