miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 3' -57.1 NC_001875.2 + 111834 0.66 0.853311
Target:  5'- ----uGACGGCuGCGCgaGCCGgCCAGg- -3'
miRNA:   3'- guuuuUUGCCG-CGCG--CGGCgGGUCgc -5'
6900 3' -57.1 NC_001875.2 + 311 0.66 0.853311
Target:  5'- -------gGGCGCgcuuuGCGCCGCuuCCAGCc -3'
miRNA:   3'- guuuuuugCCGCG-----CGCGGCG--GGUCGc -5'
6900 3' -57.1 NC_001875.2 + 102717 0.66 0.853311
Target:  5'- aCAAGAcGCGGUGCuuuUGCUGCgaCGGCGg -3'
miRNA:   3'- -GUUUUuUGCCGCGc--GCGGCGg-GUCGC- -5'
6900 3' -57.1 NC_001875.2 + 76106 0.66 0.853311
Target:  5'- -----uAUGG-GCGCGCCGUagcgcuccuuuuCCAGCGc -3'
miRNA:   3'- guuuuuUGCCgCGCGCGGCG------------GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 47671 0.66 0.853311
Target:  5'- -cGGAcGCGGCcgcgGCGCGCCGCgCGuuucucaacGCGg -3'
miRNA:   3'- guUUUuUGCCG----CGCGCGGCGgGU---------CGC- -5'
6900 3' -57.1 NC_001875.2 + 68715 0.66 0.853311
Target:  5'- ------cCGGC-CGCG-CGCCCGGCc -3'
miRNA:   3'- guuuuuuGCCGcGCGCgGCGGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 8506 0.66 0.853311
Target:  5'- gCAAuuuAAgGGCGUGCGCUcuGCCUGcGCGu -3'
miRNA:   3'- -GUUuu-UUgCCGCGCGCGG--CGGGU-CGC- -5'
6900 3' -57.1 NC_001875.2 + 9322 0.66 0.853311
Target:  5'- gCAAu---CGGCGaa-GCUGCCCGGCc -3'
miRNA:   3'- -GUUuuuuGCCGCgcgCGGCGGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 42007 0.66 0.853311
Target:  5'- gAAAAAAuCGGCGgGC-CCGUuaaCCGGCa -3'
miRNA:   3'- gUUUUUU-GCCGCgCGcGGCG---GGUCGc -5'
6900 3' -57.1 NC_001875.2 + 61924 0.66 0.853311
Target:  5'- -cGGAAACGcGaacaauuuaGCGCGCCGCguuugucgaCCGGCGc -3'
miRNA:   3'- guUUUUUGC-Cg--------CGCGCGGCG---------GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 83773 0.66 0.848556
Target:  5'- gCGAuuGACGcugccacucguuguaGCGCGCGCCcucguGCCUgugGGCGg -3'
miRNA:   3'- -GUUuuUUGC---------------CGCGCGCGG-----CGGG---UCGC- -5'
6900 3' -57.1 NC_001875.2 + 119182 0.66 0.845347
Target:  5'- -----cGCGGCGCGCGUCaacaaCAGCa -3'
miRNA:   3'- guuuuuUGCCGCGCGCGGcgg--GUCGc -5'
6900 3' -57.1 NC_001875.2 + 38778 0.66 0.845347
Target:  5'- uGuuGGGCGGagaGCGCGCCcGCaauuCGGCGc -3'
miRNA:   3'- gUuuUUUGCCg--CGCGCGG-CGg---GUCGC- -5'
6900 3' -57.1 NC_001875.2 + 5121 0.66 0.845347
Target:  5'- aCGGAAAggucacguccGCGGaCGUGCGCCGCUuCGGg- -3'
miRNA:   3'- -GUUUUU----------UGCC-GCGCGCGGCGG-GUCgc -5'
6900 3' -57.1 NC_001875.2 + 115079 0.66 0.845347
Target:  5'- -----cGCGGCGCGCaGUcacgaCGCCgGGCu -3'
miRNA:   3'- guuuuuUGCCGCGCG-CG-----GCGGgUCGc -5'
6900 3' -57.1 NC_001875.2 + 110590 0.66 0.845347
Target:  5'- ------cCGcGCGCGCGCCuggaCCAGCu -3'
miRNA:   3'- guuuuuuGC-CGCGCGCGGcg--GGUCGc -5'
6900 3' -57.1 NC_001875.2 + 32560 0.66 0.845347
Target:  5'- cCGAGGAGCGGCuGCagcaGUGCCGCgC-GCa -3'
miRNA:   3'- -GUUUUUUGCCG-CG----CGCGGCGgGuCGc -5'
6900 3' -57.1 NC_001875.2 + 105760 0.66 0.845347
Target:  5'- uGAGAAACGuGaCGCccGCGCUGCaauggaCAGCGu -3'
miRNA:   3'- gUUUUUUGC-C-GCG--CGCGGCGg-----GUCGC- -5'
6900 3' -57.1 NC_001875.2 + 54182 0.66 0.845347
Target:  5'- ------cUGGCGCaaaacGCGUCGCCCGGg- -3'
miRNA:   3'- guuuuuuGCCGCG-----CGCGGCGGGUCgc -5'
6900 3' -57.1 NC_001875.2 + 16914 0.66 0.845347
Target:  5'- ----cGACGGCGCGgGCCucguguuugagcGCaUCGGCGc -3'
miRNA:   3'- guuuuUUGCCGCGCgCGG------------CG-GGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.