miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6919 5' -61.1 NC_001875.2 + 9256 0.66 0.638447
Target:  5'- gGGCCaguaacgcaauACCAGGuccuCGCGCgCGuCCCCGAu -3'
miRNA:   3'- aCCGG-----------UGGUUU----GCGCGgGU-GGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 5830 0.66 0.638447
Target:  5'- aGcGCCGCCGaucugGACGCGCCCGCgUa--- -3'
miRNA:   3'- aC-CGGUGGU-----UUGCGCGGGUGgGgcuu -5'
6919 5' -61.1 NC_001875.2 + 5127 0.66 0.638447
Target:  5'- aGGUCACguccgCGGACGUGCgCCGCUUCGGGu -3'
miRNA:   3'- aCCGGUG-----GUUUGCGCG-GGUGGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 107815 0.66 0.638447
Target:  5'- -aGCCACgCGAcCGCcgaGCCCGCgCCCGGu -3'
miRNA:   3'- acCGGUG-GUUuGCG---CGGGUG-GGGCUu -5'
6919 5' -61.1 NC_001875.2 + 82123 0.66 0.638447
Target:  5'- gUGGaCCuguuuuCCGAGgaCGCCCACCUCGAGu -3'
miRNA:   3'- -ACC-GGu-----GGUUUgcGCGGGUGGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 85215 0.66 0.638447
Target:  5'- gGGCCGCCGcGCgguaGCGCCgCAUgUCGAc -3'
miRNA:   3'- aCCGGUGGUuUG----CGCGG-GUGgGGCUu -5'
6919 5' -61.1 NC_001875.2 + 30940 0.66 0.638447
Target:  5'- uUGGCCGCaCAggucucgccAugGCGCCCACgCgCGc- -3'
miRNA:   3'- -ACCGGUG-GU---------UugCGCGGGUG-GgGCuu -5'
6919 5' -61.1 NC_001875.2 + 120758 0.66 0.628336
Target:  5'- gGGCCGuguCCAgGGCGCGCgCCACgCCa-- -3'
miRNA:   3'- aCCGGU---GGU-UUGCGCG-GGUGgGGcuu -5'
6919 5' -61.1 NC_001875.2 + 36820 0.66 0.628336
Target:  5'- cGcGCCGCgGcaguuGCGCGCCCGCgCCa-- -3'
miRNA:   3'- aC-CGGUGgUu----UGCGCGGGUGgGGcuu -5'
6919 5' -61.1 NC_001875.2 + 57032 0.66 0.628336
Target:  5'- cGcGCCGCUggGCGCGUCgUACUCCa-- -3'
miRNA:   3'- aC-CGGUGGuuUGCGCGG-GUGGGGcuu -5'
6919 5' -61.1 NC_001875.2 + 47461 0.66 0.628336
Target:  5'- cGGCUACCGA---CG-CCGCCCCGGc -3'
miRNA:   3'- aCCGGUGGUUugcGCgGGUGGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 34083 0.66 0.627325
Target:  5'- -uGCCGCC--ACGCGCUugucgauCACCCCGu- -3'
miRNA:   3'- acCGGUGGuuUGCGCGG-------GUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 66119 0.66 0.618228
Target:  5'- gGGCgGCgAGGCG-GCgCCGCCCgCGGAa -3'
miRNA:   3'- aCCGgUGgUUUGCgCG-GGUGGG-GCUU- -5'
6919 5' -61.1 NC_001875.2 + 41438 0.66 0.618228
Target:  5'- gGGCCGCU--GCGCGCgCACaggcgCCGGu -3'
miRNA:   3'- aCCGGUGGuuUGCGCGgGUGg----GGCUu -5'
6919 5' -61.1 NC_001875.2 + 20657 0.66 0.618228
Target:  5'- cGcGCCGCCcAGCGCGCCCAa---GAAa -3'
miRNA:   3'- aC-CGGUGGuUUGCGCGGGUggggCUU- -5'
6919 5' -61.1 NC_001875.2 + 37357 0.66 0.618228
Target:  5'- cGGCCGCgcgcucgugCGAACGCGCgCGCCgCUGc- -3'
miRNA:   3'- aCCGGUG---------GUUUGCGCGgGUGG-GGCuu -5'
6919 5' -61.1 NC_001875.2 + 105681 0.66 0.608131
Target:  5'- cGGCCACCcacacacCGCGCCCGUCCa--- -3'
miRNA:   3'- aCCGGUGGuuu----GCGCGGGUGGGgcuu -5'
6919 5' -61.1 NC_001875.2 + 17824 0.66 0.608131
Target:  5'- gGGgCACCAugugccucaugAugGUGCCgGCCgCCGAu -3'
miRNA:   3'- aCCgGUGGU-----------UugCGCGGgUGG-GGCUu -5'
6919 5' -61.1 NC_001875.2 + 88078 0.66 0.608131
Target:  5'- gGGCCGCaCAAcuGCGuCGUgUugCCCGAc -3'
miRNA:   3'- aCCGGUG-GUU--UGC-GCGgGugGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 62836 0.66 0.608131
Target:  5'- cGcGCCACC--ACGUGCUUGCCCCc-- -3'
miRNA:   3'- aC-CGGUGGuuUGCGCGGGUGGGGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.