miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6923 5' -62.3 NC_001875.2 + 92562 0.66 0.606966
Target:  5'- uUGGUGuCGGCg--GGCAgaagccgccCCGCGUCGc -3'
miRNA:   3'- gACCGC-GCCGugaCCGU---------GGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 36581 0.66 0.606966
Target:  5'- -cGGCuguugcaaaauGCGGCGCagccGCugCGCGUCGc -3'
miRNA:   3'- gaCCG-----------CGCCGUGac--CGugGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 96195 0.66 0.606966
Target:  5'- aUGGcCGCGcacuuGCGCUGcGCcagauaguCCGCGUCGg -3'
miRNA:   3'- gACC-GCGC-----CGUGAC-CGu-------GGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 31867 0.66 0.606966
Target:  5'- --cGCGCGuGgACUGGCGCCG-GUUGc -3'
miRNA:   3'- gacCGCGC-CgUGACCGUGGCgCAGCa -5'
6923 5' -62.3 NC_001875.2 + 41809 0.66 0.606966
Target:  5'- -cGGCaCGcGCGCcGGCGCCGCGgccaGUu -3'
miRNA:   3'- gaCCGcGC-CGUGaCCGUGGCGCag--CA- -5'
6923 5' -62.3 NC_001875.2 + 129545 0.66 0.606966
Target:  5'- gCUGcGCGCGGcCAC-GGCGCgCGCG-Ca- -3'
miRNA:   3'- -GAC-CGCGCC-GUGaCCGUG-GCGCaGca -5'
6923 5' -62.3 NC_001875.2 + 3864 0.66 0.597066
Target:  5'- --cGUGUGGCACggcaGCACCGCGcCGc -3'
miRNA:   3'- gacCGCGCCGUGac--CGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 95016 0.66 0.597066
Target:  5'- gUGGCGCgGGCGCgcaacuGCCGCGgcgCGUa -3'
miRNA:   3'- gACCGCG-CCGUGaccg--UGGCGCa--GCA- -5'
6923 5' -62.3 NC_001875.2 + 90007 0.66 0.597066
Target:  5'- -cGGCGCGGCaACUGGa--CGCG-Ca- -3'
miRNA:   3'- gaCCGCGCCG-UGACCgugGCGCaGca -5'
6923 5' -62.3 NC_001875.2 + 31248 0.66 0.597066
Target:  5'- -cGGC-CGGCGCccGGC-CCGCGUaCGc -3'
miRNA:   3'- gaCCGcGCCGUGa-CCGuGGCGCA-GCa -5'
6923 5' -62.3 NC_001875.2 + 123338 0.66 0.597066
Target:  5'- -aGuGCGCGGCGCccacacggacGGCGCCcgGCGUgGUg -3'
miRNA:   3'- gaC-CGCGCCGUGa---------CCGUGG--CGCAgCA- -5'
6923 5' -62.3 NC_001875.2 + 90871 0.66 0.597066
Target:  5'- -cGGUGUugucgaacGUGCUGGCcgggGCCGCGUCGg -3'
miRNA:   3'- gaCCGCGc-------CGUGACCG----UGGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 102870 0.66 0.597066
Target:  5'- -gGGCaGCGGCACUuuguccaccGGaaaGCCGCGgcCGUa -3'
miRNA:   3'- gaCCG-CGCCGUGA---------CCg--UGGCGCa-GCA- -5'
6923 5' -62.3 NC_001875.2 + 45214 0.66 0.596078
Target:  5'- gCUGGCGUacacgucGcGCGCgaacaGGCGgCGCGUCGc -3'
miRNA:   3'- -GACCGCG-------C-CGUGa----CCGUgGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 29285 0.66 0.587191
Target:  5'- -cGGCGgGGCGC-GGUcguguGgCGUGUCGUg -3'
miRNA:   3'- gaCCGCgCCGUGaCCG-----UgGCGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 45160 0.66 0.587191
Target:  5'- aCUGGC-CaGGUACgucuccaGCACCGCGUUGa -3'
miRNA:   3'- -GACCGcG-CCGUGac-----CGUGGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 54351 0.66 0.584235
Target:  5'- -aGGaauGCGcGCGCUGGUACCGguucacauacagcaCGUCGg -3'
miRNA:   3'- gaCCg--CGC-CGUGACCGUGGC--------------GCAGCa -5'
6923 5' -62.3 NC_001875.2 + 43547 0.66 0.577347
Target:  5'- -cGGUGCGGaCAau--CACCGCGUCGc -3'
miRNA:   3'- gaCCGCGCC-GUgaccGUGGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 103003 0.66 0.577347
Target:  5'- gUGGCguGCGGCAaguGCGCUGCGggCGUg -3'
miRNA:   3'- gACCG--CGCCGUgacCGUGGCGCa-GCA- -5'
6923 5' -62.3 NC_001875.2 + 112358 0.66 0.577347
Target:  5'- aCUGGUuuaGCGGCACgauggucaGGCugCGCGaaauuUCGc -3'
miRNA:   3'- -GACCG---CGCCGUGa-------CCGugGCGC-----AGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.