miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6927 3' -65.1 NC_001875.2 + 101157 0.66 0.481084
Target:  5'- cGACCaCGUgGCCGUGC--GCGuGGCGCUg -3'
miRNA:   3'- -CUGG-GCGgCGGCGUGguCGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 91713 0.66 0.481084
Target:  5'- aGCCCauggaggugacgGCCGUCggcaaguacaGCGCCAGCcaguGGCGCg -3'
miRNA:   3'- cUGGG------------CGGCGG----------CGUGGUCGu---CCGCGg -5'
6927 3' -65.1 NC_001875.2 + 122286 0.66 0.481084
Target:  5'- cGGCCgGCCucauauCCGCucACCAGCcgcguccuaucGGGCGCg -3'
miRNA:   3'- -CUGGgCGGc-----GGCG--UGGUCG-----------UCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 36712 0.66 0.481084
Target:  5'- cGCCgGCCGUgGCGCgcuccacaaCGGuUAGGCGCUc -3'
miRNA:   3'- cUGGgCGGCGgCGUG---------GUC-GUCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 40196 0.66 0.481084
Target:  5'- aACCCGCUGgUGC-CCAuCAcggaaauuGGCGCCg -3'
miRNA:   3'- cUGGGCGGCgGCGuGGUcGU--------CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 72936 0.66 0.481084
Target:  5'- -cUUCGCUGUCGauCugCAGCguuucGGGCGCCa -3'
miRNA:   3'- cuGGGCGGCGGC--GugGUCG-----UCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 22724 0.66 0.477476
Target:  5'- --aCCGCCGCCGuCGCC-GCcuauacccucaauGGCgGCCa -3'
miRNA:   3'- cugGGCGGCGGC-GUGGuCGu------------CCG-CGG- -5'
6927 3' -65.1 NC_001875.2 + 13812 0.66 0.475677
Target:  5'- cGGCgUUGCCGUCGCACUGGUcgcgguaccggaagaGGGCGUUu -3'
miRNA:   3'- -CUG-GGCGGCGGCGUGGUCG---------------UCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 40202 0.66 0.47209
Target:  5'- cGGCCaGCUGCUGCG-CGGCuauucGGCGCa -3'
miRNA:   3'- -CUGGgCGGCGGCGUgGUCGu----CCGCGg -5'
6927 3' -65.1 NC_001875.2 + 6488 0.66 0.47209
Target:  5'- cGCCCaacGCggagUGCCGCGCCAacacGCuGGcCGCCg -3'
miRNA:   3'- cUGGG---CG----GCGGCGUGGU----CGuCC-GCGG- -5'
6927 3' -65.1 NC_001875.2 + 84334 0.66 0.47209
Target:  5'- cGCUCGCCGaggaUGCAuCCAGCAcugcauuuuGGuCGCCc -3'
miRNA:   3'- cUGGGCGGCg---GCGU-GGUCGU---------CC-GCGG- -5'
6927 3' -65.1 NC_001875.2 + 30632 0.66 0.47209
Target:  5'- aACCaaaGCCGUCGacaaaCGGCaaguuGGGCGCCg -3'
miRNA:   3'- cUGGg--CGGCGGCgug--GUCG-----UCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 20794 0.66 0.47209
Target:  5'- --gCCGUCGaCGCGCagugcGCGGGCGUCg -3'
miRNA:   3'- cugGGCGGCgGCGUGgu---CGUCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 94176 0.66 0.47209
Target:  5'- --aUCGCCGUCGUugGCUAuCAGGCGCa -3'
miRNA:   3'- cugGGCGGCGGCG--UGGUcGUCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 57723 0.66 0.47209
Target:  5'- aGCUCuaGgCGaacaCGCGCCAGCAcGGCGUCg -3'
miRNA:   3'- cUGGG--CgGCg---GCGUGGUCGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 39363 0.66 0.47209
Target:  5'- cGCCCGCCGUcuCGUGCCuacccuGCGGccacucGUGCCu -3'
miRNA:   3'- cUGGGCGGCG--GCGUGGu-----CGUC------CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 50674 0.66 0.47209
Target:  5'- cGCUgGCCGUCgGC-CCGaaAGGCGCCu -3'
miRNA:   3'- cUGGgCGGCGG-CGuGGUcgUCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 115450 0.66 0.47209
Target:  5'- aACaCCGCaccuaCCGCguugaGCUAGCGGGCGCg -3'
miRNA:   3'- cUG-GGCGgc---GGCG-----UGGUCGUCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 37879 0.66 0.471195
Target:  5'- --aCgGCgGgCCGCGCCAGCGgcuugcuGGCGCg -3'
miRNA:   3'- cugGgCGgC-GGCGUGGUCGU-------CCGCGg -5'
6927 3' -65.1 NC_001875.2 + 102565 0.66 0.463181
Target:  5'- cGACCgCGCC-CCGCcgGCgCGGUcGGCgGCCg -3'
miRNA:   3'- -CUGG-GCGGcGGCG--UG-GUCGuCCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.