miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 5' -53.3 NC_001875.2 + 23091 0.66 0.964664
Target:  5'- cCCGCGC-CGCGUg--CAGCUGCc-- -3'
miRNA:   3'- cGGCGCGcGCGCAguaGUUGAUGuug -5'
6928 5' -53.3 NC_001875.2 + 39652 0.66 0.964664
Target:  5'- aCCGCGCGCGaGUUugggccggCGGCgcgcgGCGGCg -3'
miRNA:   3'- cGGCGCGCGCgCAGua------GUUGa----UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 116911 0.66 0.964664
Target:  5'- aGCCGCGCGCgGCGgg--UGGCgcACAAUg -3'
miRNA:   3'- -CGGCGCGCG-CGCaguaGUUGa-UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 72766 0.66 0.964664
Target:  5'- -aCGCGCGUGUGUCGcccUCAAaCUuCAAa -3'
miRNA:   3'- cgGCGCGCGCGCAGU---AGUU-GAuGUUg -5'
6928 5' -53.3 NC_001875.2 + 18225 0.66 0.964664
Target:  5'- cGCCGCugaccuguucgGUGCGCGUCAaCAAa---GACg -3'
miRNA:   3'- -CGGCG-----------CGCGCGCAGUaGUUgaugUUG- -5'
6928 5' -53.3 NC_001875.2 + 77389 0.66 0.964664
Target:  5'- cGCUGUGCG-GCG-CcgCGGCUaACGACc -3'
miRNA:   3'- -CGGCGCGCgCGCaGuaGUUGA-UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 128788 0.66 0.964664
Target:  5'- cGCCGCuGCGCGCcUC-UUAcgcGCUGCccAACg -3'
miRNA:   3'- -CGGCG-CGCGCGcAGuAGU---UGAUG--UUG- -5'
6928 5' -53.3 NC_001875.2 + 6765 0.66 0.963984
Target:  5'- uGCCGCGCauucgcgGCGUGUuucagggCAUCAGCgacccGCAGa -3'
miRNA:   3'- -CGGCGCG-------CGCGCA-------GUAGUUGa----UGUUg -5'
6928 5' -53.3 NC_001875.2 + 124771 0.66 0.963984
Target:  5'- uGCCGCccguguuguugaGCGCGCGgauuaugucuugCAcCAGCgugGCGGCg -3'
miRNA:   3'- -CGGCG------------CGCGCGCa-----------GUaGUUGa--UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 118109 0.66 0.961172
Target:  5'- cGCCGCGCGagugGUGgagagCAUCAaaaGCguggagGCGACc -3'
miRNA:   3'- -CGGCGCGCg---CGCa----GUAGU---UGa-----UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 11278 0.66 0.961172
Target:  5'- gGCCG-GCGCGC-UCGcUCAAa-ACAACa -3'
miRNA:   3'- -CGGCgCGCGCGcAGU-AGUUgaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 20957 0.66 0.961172
Target:  5'- gGCCGUccaGCGCaaacGCGUCG-CAAUgcccGCAGCg -3'
miRNA:   3'- -CGGCG---CGCG----CGCAGUaGUUGa---UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 89368 0.66 0.961172
Target:  5'- -gCGCGUGCGCGUguU--GCUGCGugGCu -3'
miRNA:   3'- cgGCGCGCGCGCAguAguUGAUGU--UG- -5'
6928 5' -53.3 NC_001875.2 + 88536 0.66 0.961172
Target:  5'- cCCGCGCGCGCGcC----GCUACc-- -3'
miRNA:   3'- cGGCGCGCGCGCaGuaguUGAUGuug -5'
6928 5' -53.3 NC_001875.2 + 31121 0.66 0.961172
Target:  5'- uGCCGCGCGC-CG-CAgcaAugUGCAu- -3'
miRNA:   3'- -CGGCGCGCGcGCaGUag-UugAUGUug -5'
6928 5' -53.3 NC_001875.2 + 37206 0.66 0.961172
Target:  5'- -aCGUGCGCGUaaugUAUCAcguugugccgccGCUGCAGCu -3'
miRNA:   3'- cgGCGCGCGCGca--GUAGU------------UGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 63000 0.66 0.961172
Target:  5'- aCCGCGUGCGaccCGUCcGCcagGCAGCg -3'
miRNA:   3'- cGGCGCGCGCgcaGUAGuUGa--UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 13928 0.66 0.961172
Target:  5'- gGCCGuCGCGUuCGUUAucUCGGCcAUAACa -3'
miRNA:   3'- -CGGC-GCGCGcGCAGU--AGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 88893 0.66 0.961172
Target:  5'- cGCUGCGCGgGCugcugacgcacGcCAcguUUGACUGCGACg -3'
miRNA:   3'- -CGGCGCGCgCG-----------CaGU---AGUUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 98738 0.66 0.961172
Target:  5'- gGUCGUG-GUGCGUgcUCAGCcGCGACg -3'
miRNA:   3'- -CGGCGCgCGCGCAguAGUUGaUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.