Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6932 | 5' | -56.6 | NC_001875.2 | + | 77707 | 0.66 | 0.868555 |
Target: 5'- uGCCGC-CGUCCGCuUGCAcGCUa--- -3' miRNA: 3'- gCGGCGcGUAGGUG-ACGUcCGAaagg -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 90383 | 0.66 | 0.868555 |
Target: 5'- aCGCCGCGCGcgCCGCaaCcGGCg--CCu -3' miRNA: 3'- -GCGGCGCGUa-GGUGacGuCCGaaaGG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 33211 | 0.66 | 0.868555 |
Target: 5'- uGCCG-GCAaaCGCgggcGCGGGCUcgCCg -3' miRNA: 3'- gCGGCgCGUagGUGa---CGUCCGAaaGG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 53443 | 0.66 | 0.868555 |
Target: 5'- gGCCaGCGCGUgcagCACUGCGGGUcgcUCg -3' miRNA: 3'- gCGG-CGCGUAg---GUGACGUCCGaa-AGg -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 126789 | 0.66 | 0.868555 |
Target: 5'- gGCUGUGCAa--GCUGCGgcGGCUUUgCa -3' miRNA: 3'- gCGGCGCGUaggUGACGU--CCGAAAgG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 277 | 0.66 | 0.868555 |
Target: 5'- uGCUgGCGUcgCCGCaUGCuGGCcaggUCCa -3' miRNA: 3'- gCGG-CGCGuaGGUG-ACGuCCGaa--AGG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 119392 | 0.66 | 0.868555 |
Target: 5'- uGCCGCugaaugGCGUCCACcGCGGcGCg---- -3' miRNA: 3'- gCGGCG------CGUAGGUGaCGUC-CGaaagg -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 52215 | 0.66 | 0.868555 |
Target: 5'- gCGCCGUGCAaacuggacgcgCgACUGC-GGCUcaacgaccugUUCCg -3' miRNA: 3'- -GCGGCGCGUa----------GgUGACGuCCGA----------AAGG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 95759 | 0.66 | 0.867806 |
Target: 5'- uGCCGCGCGagCGCgucuuguUGCAGGaa--CCg -3' miRNA: 3'- gCGGCGCGUagGUG-------ACGUCCgaaaGG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 46150 | 0.66 | 0.865545 |
Target: 5'- uCGCgGCGCGcaagcuggucgagUCGCUGCAGGCcggcgcgCCc -3' miRNA: 3'- -GCGgCGCGUa------------GGUGACGUCCGaaa----GG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 43855 | 0.66 | 0.860967 |
Target: 5'- uGCUGCGCGggcgUCGCguacGCGGGCgUUUgCg -3' miRNA: 3'- gCGGCGCGUa---GGUGa---CGUCCG-AAAgG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 95560 | 0.66 | 0.860967 |
Target: 5'- uGCgGCGCAUUgGCgcuccguugUGCAGGCgUUgCa -3' miRNA: 3'- gCGgCGCGUAGgUG---------ACGUCCGaAAgG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 20739 | 0.66 | 0.860967 |
Target: 5'- uGCCGUGCAcgCCGCaacaaaAGGUUUUCa -3' miRNA: 3'- gCGGCGCGUa-GGUGacg---UCCGAAAGg -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 121396 | 0.66 | 0.860967 |
Target: 5'- cCGCCGCGCcgcGUCaaaGCUGCu-GCg--CCa -3' miRNA: 3'- -GCGGCGCG---UAGg--UGACGucCGaaaGG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 110277 | 0.66 | 0.860967 |
Target: 5'- gGCCGCGgAg-CGC-GCGGGCUgccCCg -3' miRNA: 3'- gCGGCGCgUagGUGaCGUCCGAaa-GG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 58198 | 0.66 | 0.860967 |
Target: 5'- cCGCCGCaGCcgCCGCaGCAGcCg--CCg -3' miRNA: 3'- -GCGGCG-CGuaGGUGaCGUCcGaaaGG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 89702 | 0.66 | 0.853168 |
Target: 5'- gGCCGaCGCGUCCAUUGCuaGCa---- -3' miRNA: 3'- gCGGC-GCGUAGGUGACGucCGaaagg -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 90130 | 0.66 | 0.853168 |
Target: 5'- aCGCCGCGCAgcgCCGC-GCAuacgcccuGGC---CCa -3' miRNA: 3'- -GCGGCGCGUa--GGUGaCGU--------CCGaaaGG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 82992 | 0.66 | 0.853168 |
Target: 5'- gCGCCGCuCGU-CGCcgGCGGGCUUgaagcggcgCCg -3' miRNA: 3'- -GCGGCGcGUAgGUGa-CGUCCGAAa--------GG- -5' |
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6932 | 5' | -56.6 | NC_001875.2 | + | 42841 | 0.66 | 0.853168 |
Target: 5'- aCGCguagCGCGCAaaUCCggcgcGCcGCAGGCgcaggUCCg -3' miRNA: 3'- -GCG----GCGCGU--AGG-----UGaCGUCCGaa---AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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