miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 3' -63.9 NC_001875.2 + 90367 0.66 0.550189
Target:  5'- cCGGCGCauaCUGCAgGCCGgGCucGUCgaUGGCGc -3'
miRNA:   3'- -GCCGCG---GGCGU-CGGCgCG--CAG--AUCGC- -5'
6935 3' -63.9 NC_001875.2 + 92621 0.66 0.550189
Target:  5'- gGGCGCgaGCGGCuugCGCGCGUUguuGUa -3'
miRNA:   3'- gCCGCGggCGUCG---GCGCGCAGau-CGc -5'
6935 3' -63.9 NC_001875.2 + 62489 0.66 0.550189
Target:  5'- gGGCGCacgCCGCuGaCUGCGCGUUUcgucGCGu -3'
miRNA:   3'- gCCGCG---GGCGuC-GGCGCGCAGAu---CGC- -5'
6935 3' -63.9 NC_001875.2 + 64961 0.66 0.550189
Target:  5'- uGGCGCCgCGaauuaGGCCGCG-GUCguGCa -3'
miRNA:   3'- gCCGCGG-GCg----UCGGCGCgCAGauCGc -5'
6935 3' -63.9 NC_001875.2 + 76699 0.66 0.550189
Target:  5'- -uGUGUCCGguGCCGC-CGUCggucgcgcugAGCGu -3'
miRNA:   3'- gcCGCGGGCguCGGCGcGCAGa---------UCGC- -5'
6935 3' -63.9 NC_001875.2 + 41352 0.66 0.550189
Target:  5'- gGGcCGCgCGCAGUuugaaCGCGCG-CUgcAGCGa -3'
miRNA:   3'- gCC-GCGgGCGUCG-----GCGCGCaGA--UCGC- -5'
6935 3' -63.9 NC_001875.2 + 46582 0.66 0.540657
Target:  5'- gGGCGCUCGUGuCCGCGCcg--AGCGc -3'
miRNA:   3'- gCCGCGGGCGUcGGCGCGcagaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 127408 0.66 0.540657
Target:  5'- -aGUGCUgGCGG-CGCGCGUC-AGCa -3'
miRNA:   3'- gcCGCGGgCGUCgGCGCGCAGaUCGc -5'
6935 3' -63.9 NC_001875.2 + 92077 0.66 0.540657
Target:  5'- uCGGCGUUC-CAGgCGCGCGUggggUUGGCc -3'
miRNA:   3'- -GCCGCGGGcGUCgGCGCGCA----GAUCGc -5'
6935 3' -63.9 NC_001875.2 + 130844 0.66 0.540657
Target:  5'- aCGG-GCCCGCAGCaaugGCGuUGUgCUGGUu -3'
miRNA:   3'- -GCCgCGGGCGUCGg---CGC-GCA-GAUCGc -5'
6935 3' -63.9 NC_001875.2 + 121140 0.66 0.540657
Target:  5'- uCGGCGUUCG-AGCgGgGCGUCcAGCc -3'
miRNA:   3'- -GCCGCGGGCgUCGgCgCGCAGaUCGc -5'
6935 3' -63.9 NC_001875.2 + 13888 0.66 0.540657
Target:  5'- uGGCGCUCGCuGCaacgggucaCG-GCGUCUAcuGCGa -3'
miRNA:   3'- gCCGCGGGCGuCG---------GCgCGCAGAU--CGC- -5'
6935 3' -63.9 NC_001875.2 + 53916 0.66 0.540657
Target:  5'- gGGCGCgCCGUuGCgGgCGCGU-UGGCGc -3'
miRNA:   3'- gCCGCG-GGCGuCGgC-GCGCAgAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 111886 0.66 0.53118
Target:  5'- aGGCGCCgGcCGGaCCGUGCGcgCcGGCc -3'
miRNA:   3'- gCCGCGGgC-GUC-GGCGCGCa-GaUCGc -5'
6935 3' -63.9 NC_001875.2 + 40694 0.66 0.53118
Target:  5'- gCGGCGCauuuggaaCCGCcGCgCGCGCGUCa---- -3'
miRNA:   3'- -GCCGCG--------GGCGuCG-GCGCGCAGaucgc -5'
6935 3' -63.9 NC_001875.2 + 115936 0.66 0.53118
Target:  5'- cCGGUGCCgGCaaAGUagCGCGgGUCUucGGCa -3'
miRNA:   3'- -GCCGCGGgCG--UCG--GCGCgCAGA--UCGc -5'
6935 3' -63.9 NC_001875.2 + 54575 0.66 0.530236
Target:  5'- gCGGCGgCCGCuucgcccGGCgGCGCGcCcacGGCGc -3'
miRNA:   3'- -GCCGCgGGCG-------UCGgCGCGCaGa--UCGC- -5'
6935 3' -63.9 NC_001875.2 + 42559 0.66 0.521765
Target:  5'- uGGuCGCgCC-CAGCCGCGCcagGUC-GGCGc -3'
miRNA:   3'- gCC-GCG-GGcGUCGGCGCG---CAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 49877 0.66 0.521765
Target:  5'- cCGGCGCCaaccaagugguCGUcgAGCUGCGCGUgCUaaucAGCu -3'
miRNA:   3'- -GCCGCGG-----------GCG--UCGGCGCGCA-GA----UCGc -5'
6935 3' -63.9 NC_001875.2 + 81980 0.66 0.521765
Target:  5'- uGGCGCCgGCaAGgCGCGCcggCcGGCGc -3'
miRNA:   3'- gCCGCGGgCG-UCgGCGCGca-GaUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.