miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 5' -54.6 NC_001875.2 + 113666 0.66 0.914118
Target:  5'- cGCCGgCACCGC-CACagUG-GCGGCGu -3'
miRNA:   3'- -UGGUgGUGGUGuGUGa-ACaCGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 39640 0.66 0.914118
Target:  5'- gGCgCGCagcgaACCGCGCGCgaguUUGggccgGCGGCGCg -3'
miRNA:   3'- -UG-GUGg----UGGUGUGUG----AACa----CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 79465 0.66 0.914118
Target:  5'- gACgCACCugCACuugcgcucuuggACGCUgGcGCGGCACg -3'
miRNA:   3'- -UG-GUGGugGUG------------UGUGAaCaCGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 6740 0.66 0.914118
Target:  5'- aACCG-CAUCACGCGCagcaacgaUGUGCcGCGCa -3'
miRNA:   3'- -UGGUgGUGGUGUGUGa-------ACACGuCGUG- -5'
6935 5' -54.6 NC_001875.2 + 10561 0.66 0.914118
Target:  5'- cCCACCAUCAgGCAgCUgcgcgacaacGUGCAGCuGCu -3'
miRNA:   3'- uGGUGGUGGUgUGU-GAa---------CACGUCG-UG- -5'
6935 5' -54.6 NC_001875.2 + 29270 0.66 0.914118
Target:  5'- gGCCGCCgACCGCGC-Cg---GCGGgGCg -3'
miRNA:   3'- -UGGUGG-UGGUGUGuGaacaCGUCgUG- -5'
6935 5' -54.6 NC_001875.2 + 47169 0.66 0.914118
Target:  5'- cCCGCCACCAacgcuGCACgaaUGCAagGCGCu -3'
miRNA:   3'- uGGUGGUGGUg----UGUGaacACGU--CGUG- -5'
6935 5' -54.6 NC_001875.2 + 40923 0.66 0.914118
Target:  5'- cAUCACCACCGCAgGCUgcGUGCccGUcaACa -3'
miRNA:   3'- -UGGUGGUGGUGUgUGAa-CACGu-CG--UG- -5'
6935 5' -54.6 NC_001875.2 + 117850 0.66 0.907913
Target:  5'- aACCGCCACCACcaggucaaACAggUUGaGCAGCGu -3'
miRNA:   3'- -UGGUGGUGGUG--------UGUg-AACaCGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 54196 0.66 0.907913
Target:  5'- gGCguCCACCAgACACacGUGCAGg-- -3'
miRNA:   3'- -UGguGGUGGUgUGUGaaCACGUCgug -5'
6935 5' -54.6 NC_001875.2 + 89999 0.66 0.907913
Target:  5'- cGCCGCCGCgGCGCggcaACUggacgcgcaacUGgccGCGGCGCc -3'
miRNA:   3'- -UGGUGGUGgUGUG----UGA-----------ACa--CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 92730 0.66 0.907913
Target:  5'- gUCGCCGCCAUggaGCGCggaacUGCAGCGu -3'
miRNA:   3'- uGGUGGUGGUG---UGUGaac--ACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 54571 0.66 0.907913
Target:  5'- cGCCGCgGCgGC-CGCUUcgcccgGCGGCGCg -3'
miRNA:   3'- -UGGUGgUGgUGuGUGAAca----CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 49602 0.66 0.907913
Target:  5'- cGCUACCACCAgCGCGCaa--GCGGCu- -3'
miRNA:   3'- -UGGUGGUGGU-GUGUGaacaCGUCGug -5'
6935 5' -54.6 NC_001875.2 + 78701 0.66 0.901457
Target:  5'- gGCCAaCACCGCGCAacaauagGCGGCAa -3'
miRNA:   3'- -UGGUgGUGGUGUGUgaaca--CGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 59520 0.66 0.901457
Target:  5'- uGCCGCCGCaaaaaCGCGCACUUuaacGUGUacAGCGu -3'
miRNA:   3'- -UGGUGGUG-----GUGUGUGAA----CACG--UCGUg -5'
6935 5' -54.6 NC_001875.2 + 49524 0.66 0.901457
Target:  5'- gACCGCgACCAguCGCUgGUGCuGgACu -3'
miRNA:   3'- -UGGUGgUGGUguGUGAaCACGuCgUG- -5'
6935 5' -54.6 NC_001875.2 + 87542 0.66 0.900797
Target:  5'- aACCACCACgaGgGCAUggUGUGCAuagccaaaaggguGCGCa -3'
miRNA:   3'- -UGGUGGUGg-UgUGUGa-ACACGU-------------CGUG- -5'
6935 5' -54.6 NC_001875.2 + 31121 0.66 0.900797
Target:  5'- uGCCGCgCGCCGCAgCAa-UGUGCAugcuuaacgcgccGCGCg -3'
miRNA:   3'- -UGGUG-GUGGUGU-GUgaACACGU-------------CGUG- -5'
6935 5' -54.6 NC_001875.2 + 43343 0.66 0.89475
Target:  5'- cGCCGCgCACCACGUACUUGcGCuccAGuCGCu -3'
miRNA:   3'- -UGGUG-GUGGUGUGUGAACaCG---UC-GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.