miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 3' -51.4 NC_001875.2 + 79087 0.65 0.984951
Target:  5'- -cGCGUUGGcguaGUGCGCAuaaaacuuggCCACGg -3'
miRNA:   3'- aaUGCAACC----CGCGCGUuaaa------GGUGCg -5'
6961 3' -51.4 NC_001875.2 + 62395 0.66 0.983811
Target:  5'- -aGCGUggccGGCGCGCAAacgCCgGCGUc -3'
miRNA:   3'- aaUGCAac--CCGCGCGUUaaaGG-UGCG- -5'
6961 3' -51.4 NC_001875.2 + 85375 0.66 0.983811
Target:  5'- -cGCGUUGGcaaaCGCcguuuGCGAUUUgCGCGCc -3'
miRNA:   3'- aaUGCAACCc---GCG-----CGUUAAAgGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 62106 0.66 0.983811
Target:  5'- -cACGcagGGGCGCGUGg---CCACGa -3'
miRNA:   3'- aaUGCaa-CCCGCGCGUuaaaGGUGCg -5'
6961 3' -51.4 NC_001875.2 + 9692 0.66 0.983811
Target:  5'- --cCGUUGGGgcucgccgucgUGCGCGccggCCGCGCc -3'
miRNA:   3'- aauGCAACCC-----------GCGCGUuaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 21738 0.66 0.983811
Target:  5'- -cGCGUucuugcucUGGcCGCGCGuggcggccUCCACGCg -3'
miRNA:   3'- aaUGCA--------ACCcGCGCGUuaa-----AGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 64153 0.66 0.983811
Target:  5'- ------cGGGCGCGuCGA--UCCugGCc -3'
miRNA:   3'- aaugcaaCCCGCGC-GUUaaAGGugCG- -5'
6961 3' -51.4 NC_001875.2 + 33221 0.66 0.983615
Target:  5'- -cGCGggcgcGGGCucgccggGCGCcGUUUCgGCGCg -3'
miRNA:   3'- aaUGCaa---CCCG-------CGCGuUAAAGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 92756 0.66 0.983217
Target:  5'- -aGCGUUGGcacagcacgacgccGCgGCGCAcaAUggCCAUGCg -3'
miRNA:   3'- aaUGCAACC--------------CG-CGCGU--UAaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 74197 0.66 0.982607
Target:  5'- -gGCGUuuugcaacgcgcaacUGGGCGgGCG--UUUgGCGCa -3'
miRNA:   3'- aaUGCA---------------ACCCGCgCGUuaAAGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 18544 0.66 0.981767
Target:  5'- gUACGUgcugcUGGGCGUGgGug-UCUugaGCGCg -3'
miRNA:   3'- aAUGCA-----ACCCGCGCgUuaaAGG---UGCG- -5'
6961 3' -51.4 NC_001875.2 + 117026 0.66 0.981767
Target:  5'- ------aGGGCGCGCuga--CCAUGCu -3'
miRNA:   3'- aaugcaaCCCGCGCGuuaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 23261 0.66 0.980898
Target:  5'- -aGCGacGGGCaGCGCAGcgccagcaccgCCGCGCc -3'
miRNA:   3'- aaUGCaaCCCG-CGCGUUaaa--------GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 66113 0.66 0.979536
Target:  5'- -cGCGgcGGGCG-GCGAgg-CgGCGCc -3'
miRNA:   3'- aaUGCaaCCCGCgCGUUaaaGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 95703 0.66 0.979536
Target:  5'- cUACGgcucGGGCGCGCugaa---ACGCg -3'
miRNA:   3'- aAUGCaa--CCCGCGCGuuaaaggUGCG- -5'
6961 3' -51.4 NC_001875.2 + 83614 0.66 0.979536
Target:  5'- --gUGUUcGGCGCGU----UCCGCGCc -3'
miRNA:   3'- aauGCAAcCCGCGCGuuaaAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 105961 0.66 0.979536
Target:  5'- -aGCGUcuccuUGGGCGCcGCAAUgggCAgGCu -3'
miRNA:   3'- aaUGCA-----ACCCGCG-CGUUAaagGUgCG- -5'
6961 3' -51.4 NC_001875.2 + 121296 0.66 0.979536
Target:  5'- -gAUGgUGGGCGUGCuuUUUCCGa-- -3'
miRNA:   3'- aaUGCaACCCGCGCGuuAAAGGUgcg -5'
6961 3' -51.4 NC_001875.2 + 62772 0.66 0.979536
Target:  5'- -cGCGcagGGGUGCGU---UUgCACGCa -3'
miRNA:   3'- aaUGCaa-CCCGCGCGuuaAAgGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 83012 0.66 0.977109
Target:  5'- -gGCGUcagcUGGaccGCGCGCAgcgaGUgcgCCACGUg -3'
miRNA:   3'- aaUGCA----ACC---CGCGCGU----UAaa-GGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.