Results 1 - 20 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6961 | 5' | -62 | NC_001875.2 | + | 105437 | 0.66 | 0.625223 |
Target: 5'- uUGcAUGCCGGCGUUUgGCgacaacgaguuguuuGCGCacuguuuugCGGCCGc -3' miRNA: 3'- -AC-UGCGGCCGCAAA-CG---------------CGCG---------GCCGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 129529 | 0.66 | 0.621243 |
Target: 5'- aGGCcgaGCUGGCcgagcUGCGCGC-GGCCAc -3' miRNA: 3'- aCUG---CGGCCGcaa--ACGCGCGgCCGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 63272 | 0.66 | 0.621243 |
Target: 5'- cGGCGCCacGCGg-UGCGCGaCCGccGCCGc -3' miRNA: 3'- aCUGCGGc-CGCaaACGCGC-GGC--CGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 62525 | 0.66 | 0.621243 |
Target: 5'- uUGACGUCgacuuGGaCGcUUGCGCGuuGGCa- -3' miRNA: 3'- -ACUGCGG-----CC-GCaAACGCGCggCCGgu -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 114086 | 0.66 | 0.615276 |
Target: 5'- cGACGUcugcguguacgcaaaCGGCGUUUGgcuggacaCGaCGCCGGUCu -3' miRNA: 3'- aCUGCG---------------GCCGCAAAC--------GC-GCGGCCGGu -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 32940 | 0.66 | 0.611301 |
Target: 5'- -cGCGUCa--GUUUGCGCGCCGcucGCCAu -3' miRNA: 3'- acUGCGGccgCAAACGCGCGGC---CGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 26535 | 0.66 | 0.611301 |
Target: 5'- uUGA-GCUGGCGcUUgagucgGCGUGCUGGCa- -3' miRNA: 3'- -ACUgCGGCCGC-AAa-----CGCGCGGCCGgu -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 86378 | 0.66 | 0.611301 |
Target: 5'- aGACGCgCGGCugc-GgGCGCCGagcGCCGa -3' miRNA: 3'- aCUGCG-GCCGcaaaCgCGCGGC---CGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 9318 | 0.66 | 0.611301 |
Target: 5'- gGACGCaauCGGCGaa-GCuGC-CCGGCCGg -3' miRNA: 3'- aCUGCG---GCCGCaaaCG-CGcGGCCGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 104623 | 0.66 | 0.601372 |
Target: 5'- --uCGUCGGCcg-UGUGCGCCgacaaGGCCGa -3' miRNA: 3'- acuGCGGCCGcaaACGCGCGG-----CCGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 40372 | 0.66 | 0.601372 |
Target: 5'- cGGCGCCaggaaaucGGUGgacaUGCGCGCCcacgcGCCGc -3' miRNA: 3'- aCUGCGG--------CCGCaa--ACGCGCGGc----CGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 89157 | 0.66 | 0.601372 |
Target: 5'- -cGCGCCGcGCGguuucgUGCaCGCUGGCgCAa -3' miRNA: 3'- acUGCGGC-CGCaa----ACGcGCGGCCG-GU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 43481 | 0.66 | 0.601372 |
Target: 5'- -cGCGCCGGCGUUUuuguuCGCGCuCGuaGUCAa -3' miRNA: 3'- acUGCGGCCGCAAAc----GCGCG-GC--CGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 116789 | 0.66 | 0.601372 |
Target: 5'- uUGAUGCCGGgGUacaccuggUGCGaguugaGCUGGUCu -3' miRNA: 3'- -ACUGCGGCCgCAa-------ACGCg-----CGGCCGGu -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 72566 | 0.66 | 0.601372 |
Target: 5'- gGGCGCgGGCGcggGCGCuGCgGGUg- -3' miRNA: 3'- aCUGCGgCCGCaaaCGCG-CGgCCGgu -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 51208 | 0.66 | 0.601372 |
Target: 5'- cUGGCGCCGcccgucgagcgcGCGUUccGCGCGCCcaCCGu -3' miRNA: 3'- -ACUGCGGC------------CGCAAa-CGCGCGGccGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 68891 | 0.66 | 0.592455 |
Target: 5'- uUGACGCCGcguccggcgaGUGUcgagucaacgagcugUGCGaggGCCGGCCGg -3' miRNA: 3'- -ACUGCGGC----------CGCAa--------------ACGCg--CGGCCGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 109839 | 0.66 | 0.591466 |
Target: 5'- gGGCaguGCCGGCGgauuugcUGCGCGCguuuGCCAa -3' miRNA: 3'- aCUG---CGGCCGCaa-----ACGCGCGgc--CGGU- -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 97870 | 0.66 | 0.591466 |
Target: 5'- --gUGCCGGuCGgcUGCGCGCCgcacgGGCa- -3' miRNA: 3'- acuGCGGCC-GCaaACGCGCGG-----CCGgu -5' |
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6961 | 5' | -62 | NC_001875.2 | + | 65754 | 0.66 | 0.591466 |
Target: 5'- gGGCcUCGGCGUauucgUGCGCGgCGGgCGg -3' miRNA: 3'- aCUGcGGCCGCAa----ACGCGCgGCCgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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