miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6985 5' -55.6 NC_001875.2 + 81720 0.66 0.909478
Target:  5'- -aGAGCGCUA--CGUGCGCGUcaaCGAc -3'
miRNA:   3'- caCUCGCGAUugGCAUGUGCGcg-GCU- -5'
6985 5' -55.6 NC_001875.2 + 117969 0.66 0.909478
Target:  5'- -cGAGCGCcaaaaUGGCCuguUGCGCGCGCg-- -3'
miRNA:   3'- caCUCGCG-----AUUGGc--AUGUGCGCGgcu -5'
6985 5' -55.6 NC_001875.2 + 86372 0.66 0.909478
Target:  5'- ---cGCGCUAgacgcGCgGcUGCGgGCGCCGAg -3'
miRNA:   3'- cacuCGCGAU-----UGgC-AUGUgCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 126078 0.66 0.909478
Target:  5'- -gGAcGCGCUGaacGCgGUGCAaagcaaGCGCCGc -3'
miRNA:   3'- caCU-CGCGAU---UGgCAUGUg-----CGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 113152 0.66 0.909478
Target:  5'- ---uGUGCacGCCGgcGCGCGCGCCGu -3'
miRNA:   3'- cacuCGCGauUGGCa-UGUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 90030 0.66 0.903232
Target:  5'- cUGGcCGCggcGCCGgcGCGCGUGCCGGc -3'
miRNA:   3'- cACUcGCGau-UGGCa-UGUGCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 28619 0.66 0.903232
Target:  5'- uUGAGCGCaaGGCCGgcgucaGCGUGCCc- -3'
miRNA:   3'- cACUCGCGa-UUGGCaug---UGCGCGGcu -5'
6985 5' -55.6 NC_001875.2 + 126981 0.66 0.903232
Target:  5'- -cGcAGCGUgcacgAGCUGUGCACGCGUUc- -3'
miRNA:   3'- caC-UCGCGa----UUGGCAUGUGCGCGGcu -5'
6985 5' -55.6 NC_001875.2 + 97107 0.66 0.903232
Target:  5'- --aGGUGCUuuuaGACCgGUGCACGCuGCCa- -3'
miRNA:   3'- cacUCGCGA----UUGG-CAUGUGCG-CGGcu -5'
6985 5' -55.6 NC_001875.2 + 18369 0.66 0.903232
Target:  5'- -cGGcGUGCUAAugcaauugUCGUACAC-CGCCGAa -3'
miRNA:   3'- caCU-CGCGAUU--------GGCAUGUGcGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 963 0.66 0.903232
Target:  5'- cUGAGC---AACCGUucuuGCACGCGgCGAc -3'
miRNA:   3'- cACUCGcgaUUGGCA----UGUGCGCgGCU- -5'
6985 5' -55.6 NC_001875.2 + 37361 0.66 0.903232
Target:  5'- -cGcGCGCUcGugCGaacGCGCGCGCCGc -3'
miRNA:   3'- caCuCGCGA-UugGCa--UGUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 31914 0.66 0.903232
Target:  5'- uUGGccGCGCUGcACCGcGCGCGgGCCc- -3'
miRNA:   3'- cACU--CGCGAU-UGGCaUGUGCgCGGcu -5'
6985 5' -55.6 NC_001875.2 + 30104 0.66 0.903232
Target:  5'- uGUGcGCGCUGuacGCCGUgACG-GUGCUGAg -3'
miRNA:   3'- -CACuCGCGAU---UGGCA-UGUgCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 39654 0.66 0.903232
Target:  5'- -cGcGCGCgaguuugGGCCGgcgGCGCGCGgCGGc -3'
miRNA:   3'- caCuCGCGa------UUGGCa--UGUGCGCgGCU- -5'
6985 5' -55.6 NC_001875.2 + 76721 0.66 0.903232
Target:  5'- ---cGCGCUGAgCGUcggugACGCGgaCGCCGAc -3'
miRNA:   3'- cacuCGCGAUUgGCA-----UGUGC--GCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 88029 0.66 0.903232
Target:  5'- ---uGCGCUAGCCGgcaaaGC-CGUGCCa- -3'
miRNA:   3'- cacuCGCGAUUGGCa----UGuGCGCGGcu -5'
6985 5' -55.6 NC_001875.2 + 62196 0.66 0.89937
Target:  5'- gGUGAGCggGCUGagGCCGacggcguccaccuCGCGCGCCa- -3'
miRNA:   3'- -CACUCG--CGAU--UGGCau-----------GUGCGCGGcu -5'
6985 5' -55.6 NC_001875.2 + 122131 0.66 0.896747
Target:  5'- -cGGGCGCggcgcGGCCGgcgcGCACGaCGgCGAg -3'
miRNA:   3'- caCUCGCGa----UUGGCa---UGUGC-GCgGCU- -5'
6985 5' -55.6 NC_001875.2 + 71931 0.66 0.896747
Target:  5'- -cGAGCGCcuUGACCGcgcgcuccGCGCGCaGCCu- -3'
miRNA:   3'- caCUCGCG--AUUGGCa-------UGUGCG-CGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.