miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6992 5' -61 NC_001875.2 + 73865 0.66 0.67985
Target:  5'- uUGGUGCG-GCgcgaaaaCCGCGAaaCGGCGg -3'
miRNA:   3'- -ACCACGCaCGaguc---GGCGCU--GCCGCg -5'
6992 5' -61 NC_001875.2 + 130658 0.66 0.67985
Target:  5'- cGGUucaGCGUGg-CAaaguGCCGCGACGaCGCc -3'
miRNA:   3'- aCCA---CGCACgaGU----CGGCGCUGCcGCG- -5'
6992 5' -61 NC_001875.2 + 30196 0.66 0.67985
Target:  5'- uUGGcGCc-GUUC-GCCGCGACGGcCGUu -3'
miRNA:   3'- -ACCaCGcaCGAGuCGGCGCUGCC-GCG- -5'
6992 5' -61 NC_001875.2 + 66074 0.66 0.67985
Target:  5'- ---cGCGUGCUCgcccAGCCGCcGGCucaGGuCGCu -3'
miRNA:   3'- accaCGCACGAG----UCGGCG-CUG---CC-GCG- -5'
6992 5' -61 NC_001875.2 + 53914 0.66 0.67985
Target:  5'- gUGG-GCGcGCcguugCGGgCGCGuuGGCGCg -3'
miRNA:   3'- -ACCaCGCaCGa----GUCgGCGCugCCGCG- -5'
6992 5' -61 NC_001875.2 + 79610 0.66 0.67985
Target:  5'- aGGU-CGUugaGCcgCAGUCGCGcguccaguuugcACGGCGCg -3'
miRNA:   3'- aCCAcGCA---CGa-GUCGGCGC------------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 17806 0.66 0.672908
Target:  5'- ---cGCGUGCUaccaucuggaccgcgCGGCCGCcaugcgcGAgGGCGCc -3'
miRNA:   3'- accaCGCACGA---------------GUCGGCG-------CUgCCGCG- -5'
6992 5' -61 NC_001875.2 + 62195 0.66 0.669927
Target:  5'- cGGUgaGCGgGCUgAGgC-CGACGGCGUc -3'
miRNA:   3'- aCCA--CGCaCGAgUCgGcGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 100406 0.66 0.669927
Target:  5'- aGGUGCuuGUGUUUGGCC---ACGGCGUc -3'
miRNA:   3'- aCCACG--CACGAGUCGGcgcUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 124352 0.66 0.669927
Target:  5'- gUGGUGCGcaaagUGCUC--CCGUccaAUGGCGCa -3'
miRNA:   3'- -ACCACGC-----ACGAGucGGCGc--UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 11796 0.66 0.669927
Target:  5'- aGGUaGUuguUGC-CGGCCGCGuCGGUGUu -3'
miRNA:   3'- aCCA-CGc--ACGaGUCGGCGCuGCCGCG- -5'
6992 5' -61 NC_001875.2 + 121152 0.66 0.669927
Target:  5'- cGGgGCGU-C-CAGCCGUuGCGGCaGCg -3'
miRNA:   3'- aCCaCGCAcGaGUCGGCGcUGCCG-CG- -5'
6992 5' -61 NC_001875.2 + 97976 0.66 0.669927
Target:  5'- ---cGCcguucUGC-CGGCCGCGcACGGUGCg -3'
miRNA:   3'- accaCGc----ACGaGUCGGCGC-UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 54442 0.66 0.669927
Target:  5'- ---cGCGUgGCggucgUUAGCCGCGGCGcCGCa -3'
miRNA:   3'- accaCGCA-CG-----AGUCGGCGCUGCcGCG- -5'
6992 5' -61 NC_001875.2 + 108840 0.66 0.669927
Target:  5'- cGGUGCGcGCcCAaaaCGCGcagaucuugGCGGCGCu -3'
miRNA:   3'- aCCACGCaCGaGUcg-GCGC---------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 67924 0.66 0.669927
Target:  5'- gGGUuCGgGUUCAuGauGCGGCGGCGCc -3'
miRNA:   3'- aCCAcGCaCGAGU-CggCGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 42684 0.66 0.669927
Target:  5'- ---aGCGUGCaCGaaaCCGCG-CGGCGCg -3'
miRNA:   3'- accaCGCACGaGUc--GGCGCuGCCGCG- -5'
6992 5' -61 NC_001875.2 + 45459 0.66 0.669927
Target:  5'- cGGcGCucgGCgcccgCAGCCGCGcgucuagcGCGGUGCc -3'
miRNA:   3'- aCCaCGca-CGa----GUCGGCGC--------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 42946 0.66 0.669927
Target:  5'- ---gGCGUGCgucagCAGcCCGCG-CaGCGCg -3'
miRNA:   3'- accaCGCACGa----GUC-GGCGCuGcCGCG- -5'
6992 5' -61 NC_001875.2 + 19105 0.66 0.669927
Target:  5'- aGGgccGUGuUGCUguGCgCGCGAC-GCGCc -3'
miRNA:   3'- aCCa--CGC-ACGAguCG-GCGCUGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.