miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 3' -63.8 NC_001875.2 + 95015 0.65 0.514615
Target:  5'- aGUGGCGCgggcgcgcaacugCCGCgGCGCguaacGCGCa--- -3'
miRNA:   3'- gCGCCGCG-------------GGCGgCGCGa----CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 114518 0.65 0.512719
Target:  5'- gGCGGCGCaaCCGCCaGCaGCUcuuuaacaucggcgGCGCUc-- -3'
miRNA:   3'- gCGCCGCG--GGCGG-CG-CGA--------------CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 93546 0.66 0.509881
Target:  5'- uGuCGGCGCUCGCCaccgcgucgucguacGCGCgcugcgagGCGCUc-- -3'
miRNA:   3'- gC-GCCGCGGGCGG---------------CGCGa-------CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 44128 0.66 0.506108
Target:  5'- cCGCGGUuUgCGuCCGCGgaGCGCUUu- -3'
miRNA:   3'- -GCGCCGcGgGC-GGCGCgaCGCGAAuu -5'
6993 3' -63.8 NC_001875.2 + 7934 0.66 0.506108
Target:  5'- gGUGGCGCUCaauucgaacgGCC-CGUUGCGUUUGu -3'
miRNA:   3'- gCGCCGCGGG----------CGGcGCGACGCGAAUu -5'
6993 3' -63.8 NC_001875.2 + 31249 0.66 0.506108
Target:  5'- gGcCGGCGCCCGgcCCGCGUacGCGUc--- -3'
miRNA:   3'- gC-GCCGCGGGC--GGCGCGa-CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 79290 0.66 0.506108
Target:  5'- uGUGGCGCgCGUgCGCGCauacugGCGCg--- -3'
miRNA:   3'- gCGCCGCGgGCG-GCGCGa-----CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 77096 0.66 0.506108
Target:  5'- gGCGGUGCCgGCgGUGCgccCGCa--- -3'
miRNA:   3'- gCGCCGCGGgCGgCGCGac-GCGaauu -5'
6993 3' -63.8 NC_001875.2 + 80647 0.66 0.506108
Target:  5'- gGCGGCGCCagaaCCGCGCcgucgUGgGCa--- -3'
miRNA:   3'- gCGCCGCGGgc--GGCGCG-----ACgCGaauu -5'
6993 3' -63.8 NC_001875.2 + 114904 0.66 0.506108
Target:  5'- aCGUGGCGCaacgCGCCGa--UGCGCUc-- -3'
miRNA:   3'- -GCGCCGCGg---GCGGCgcgACGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 48260 0.66 0.496727
Target:  5'- gGCGGCGcCCCGCCGgGacaccucaUGUGUc--- -3'
miRNA:   3'- gCGCCGC-GGGCGGCgCg-------ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 109860 0.66 0.496727
Target:  5'- uGCGcGCGUuuGCCaaGCUgGCGCUg-- -3'
miRNA:   3'- gCGC-CGCGggCGGcgCGA-CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 48519 0.66 0.496727
Target:  5'- gCGCGcCGCCCGgCGCGCgccccGCGggUAu -3'
miRNA:   3'- -GCGCcGCGGGCgGCGCGa----CGCgaAUu -5'
6993 3' -63.8 NC_001875.2 + 39084 0.66 0.496727
Target:  5'- cCGCGGCGUCgUGCUGUGCcaaCGCUg-- -3'
miRNA:   3'- -GCGCCGCGG-GCGGCGCGac-GCGAauu -5'
6993 3' -63.8 NC_001875.2 + 56463 0.66 0.496727
Target:  5'- gGCGGgGUCCGCgCGCGUguuggucaGCGCc--- -3'
miRNA:   3'- gCGCCgCGGGCG-GCGCGa-------CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 12766 0.66 0.496727
Target:  5'- gGCGGUuguuguccaGCCggggCGCCGCGCacaUGCGCa--- -3'
miRNA:   3'- gCGCCG---------CGG----GCGGCGCG---ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 1034 0.66 0.496727
Target:  5'- gGCGGgGCCCGagGCGCacaGCGUUg-- -3'
miRNA:   3'- gCGCCgCGGGCggCGCGa--CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 88981 0.66 0.496727
Target:  5'- gGCGgaccuGCGCCUGCgGCGCgccggauuUGCGCg--- -3'
miRNA:   3'- gCGC-----CGCGGGCGgCGCG--------ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 98685 0.66 0.496727
Target:  5'- aGCGGCaGCgcgaCGCCGUGCUGuUGCc--- -3'
miRNA:   3'- gCGCCG-CGg---GCGGCGCGAC-GCGaauu -5'
6993 3' -63.8 NC_001875.2 + 96179 0.66 0.496727
Target:  5'- aGCGcacaaGUGCCUgaugGCCGCGCacuUGCGCUg-- -3'
miRNA:   3'- gCGC-----CGCGGG----CGGCGCG---ACGCGAauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.