miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 5' -50.2 NC_001875.2 + 61735 0.66 0.989715
Target:  5'- ---gUCGGC--CGGCUGCG-GCGCAAa -3'
miRNA:   3'- aaaaAGUUGuuGCUGGCGCuCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 31965 0.66 0.989715
Target:  5'- ----gCGACGACGAaCGCGuguGGCGCGc -3'
miRNA:   3'- aaaaaGUUGUUGCUgGCGC---UCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 84998 0.66 0.989715
Target:  5'- aUUUcCAGCAGCGugCGCaacguGUGCAAc -3'
miRNA:   3'- aAAAaGUUGUUGCugGCGcu---CGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 27222 0.66 0.989715
Target:  5'- ---gUCGGCGcacACGGCCGaCGAGgGUAu -3'
miRNA:   3'- aaaaAGUUGU---UGCUGGC-GCUCgCGUu -5'
6993 5' -50.2 NC_001875.2 + 23744 0.66 0.989715
Target:  5'- ---cUCAuguguAUGGCCGUGAGUGCGGu -3'
miRNA:   3'- aaaaAGUugu--UGCUGGCGCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 40846 0.66 0.988842
Target:  5'- -----aGACGGCGcucgccaagacgcgcACCGCGGGCGCc- -3'
miRNA:   3'- aaaaagUUGUUGC---------------UGGCGCUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 89114 0.66 0.988229
Target:  5'- ---gUCGccgcgcGCGACGACCGgGuGCGCc- -3'
miRNA:   3'- aaaaAGU------UGUUGCUGGCgCuCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 99914 0.66 0.988229
Target:  5'- ----gCAACgAGCgGGCCGCGcGCGCGGu -3'
miRNA:   3'- aaaaaGUUG-UUG-CUGGCGCuCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 118099 0.66 0.988229
Target:  5'- ----aCAugGAgGACCGCcuGCGCAAc -3'
miRNA:   3'- aaaaaGUugUUgCUGGCGcuCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 63126 0.66 0.988229
Target:  5'- -----gGAUAGCGGCCGgGcGCGCGg -3'
miRNA:   3'- aaaaagUUGUUGCUGGCgCuCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 126934 0.66 0.988229
Target:  5'- ----cCGACuACGACCGgGAGCaGCu- -3'
miRNA:   3'- aaaaaGUUGuUGCUGGCgCUCG-CGuu -5'
6993 5' -50.2 NC_001875.2 + 63268 0.66 0.988229
Target:  5'- ----cCAGCGGCGcCaCGCGGuGCGCGAc -3'
miRNA:   3'- aaaaaGUUGUUGCuG-GCGCU-CGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 46138 0.66 0.988229
Target:  5'- ----gCAACcaguCGAUCGCGGcGCGCAAg -3'
miRNA:   3'- aaaaaGUUGuu--GCUGGCGCU-CGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 92765 0.66 0.988229
Target:  5'- ----aCAGCAcgACG-CCGCG-GCGCAc -3'
miRNA:   3'- aaaaaGUUGU--UGCuGGCGCuCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 47541 0.66 0.988229
Target:  5'- --gUUCAGCGucuucGCGACgCGUaucaugacGAGCGCAAc -3'
miRNA:   3'- aaaAAGUUGU-----UGCUG-GCG--------CUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 31689 0.66 0.988229
Target:  5'- ----cCGGCGugGACCGCcgcuuGCGCGc -3'
miRNA:   3'- aaaaaGUUGUugCUGGCGcu---CGCGUu -5'
6993 5' -50.2 NC_001875.2 + 124662 0.66 0.986583
Target:  5'- ---cUCGGaauguCGGCGAUCGCGuccAGCGCAAa -3'
miRNA:   3'- aaaaAGUU-----GUUGCUGGCGC---UCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 77278 0.66 0.986583
Target:  5'- -----aAGCGGCcGCCGCG-GCGCAGu -3'
miRNA:   3'- aaaaagUUGUUGcUGGCGCuCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 3960 0.66 0.986583
Target:  5'- ---gUCAACAACGacGCCGCGcuugccaaAGCGUu- -3'
miRNA:   3'- aaaaAGUUGUUGC--UGGCGC--------UCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 58282 0.66 0.986583
Target:  5'- ---gUUGACGAaGugCGCGAGCuGCAAg -3'
miRNA:   3'- aaaaAGUUGUUgCugGCGCUCG-CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.