miRNA display CGI


Results 1 - 20 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6994 5' -57.5 NC_001875.2 + 18462 0.66 0.844339
Target:  5'- cGCCGc--GGCaCAccuuuuuuGCGCCGCGCCGc -3'
miRNA:   3'- -CGGUucaCCG-GUuu------CGCGGCGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 100114 0.66 0.844339
Target:  5'- cGCCGcG-GGCCAAcuuCGCCgaaaguaauGCGCCGGc -3'
miRNA:   3'- -CGGUuCaCCGGUUuc-GCGG---------CGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 49886 0.66 0.844339
Target:  5'- aCCAAGUGGUCGucGaGCUGCGCg-- -3'
miRNA:   3'- cGGUUCACCGGUuuCgCGGCGUGgcc -5'
6994 5' -57.5 NC_001875.2 + 23792 0.66 0.844339
Target:  5'- cCCAGGUcGCCGAcGUGUCGCuCCGcGg -3'
miRNA:   3'- cGGUUCAcCGGUUuCGCGGCGuGGC-C- -5'
6994 5' -57.5 NC_001875.2 + 33877 0.66 0.843535
Target:  5'- uGCUAGcGUGGCCGAaaugacuAGCGCCuCGgggUCGGu -3'
miRNA:   3'- -CGGUU-CACCGGUU-------UCGCGGcGU---GGCC- -5'
6994 5' -57.5 NC_001875.2 + 37821 0.66 0.841923
Target:  5'- cGCCAaggcGGUGGCgaucacguacgacaCGcuGCGCgCGCACCa- -3'
miRNA:   3'- -CGGU----UCACCG--------------GUuuCGCG-GCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 120547 0.66 0.841114
Target:  5'- cGCCAuGuUGGCagcuguuguuuuGAGCGagCGCGCCGGc -3'
miRNA:   3'- -CGGUuC-ACCGgu----------UUCGCg-GCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 94646 0.66 0.839489
Target:  5'- cGCCAGgcuuuccucgaacauGaaaugGGCCAgcGCGCgGCACgGGu -3'
miRNA:   3'- -CGGUU---------------Ca----CCGGUuuCGCGgCGUGgCC- -5'
6994 5' -57.5 NC_001875.2 + 113584 0.66 0.839489
Target:  5'- cGCCAuugGGCCAGcacggcguucgagucGGCggcggGCCGCGgCGGc -3'
miRNA:   3'- -CGGUucaCCGGUU---------------UCG-----CGGCGUgGCC- -5'
6994 5' -57.5 NC_001875.2 + 17261 0.66 0.836219
Target:  5'- cGCCGcGUuuGCCGAcGCgcacaauccGCCGCACUGGa -3'
miRNA:   3'- -CGGUuCAc-CGGUUuCG---------CGGCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 114892 0.66 0.836219
Target:  5'- cGCUGGuUGGUCAcguGGCGCaaCGCGCCGa -3'
miRNA:   3'- -CGGUUcACCGGUu--UCGCG--GCGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 97214 0.66 0.836219
Target:  5'- uGUCAGGUGcGCCAuGGUGCCGguUa-- -3'
miRNA:   3'- -CGGUUCAC-CGGUuUCGCGGCguGgcc -5'
6994 5' -57.5 NC_001875.2 + 31590 0.66 0.836219
Target:  5'- --aGGGUGGUguccGGCGCCGUGCCGu -3'
miRNA:   3'- cggUUCACCGguu-UCGCGGCGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 64968 0.66 0.836219
Target:  5'- cGCCAAaacagcGUGGCCGAGGCaaUCGggUCGGa -3'
miRNA:   3'- -CGGUU------CACCGGUUUCGc-GGCguGGCC- -5'
6994 5' -57.5 NC_001875.2 + 42575 0.66 0.836219
Target:  5'- cGCCAGGUcGGCgcacgcgcgcguCAGcucGGCGCUggGCACCGc -3'
miRNA:   3'- -CGGUUCA-CCG------------GUU---UCGCGG--CGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 5916 0.66 0.836219
Target:  5'- cGCCGGcaUGGCguuggguAGCGCCGCGCaGGu -3'
miRNA:   3'- -CGGUUc-ACCGguu----UCGCGGCGUGgCC- -5'
6994 5' -57.5 NC_001875.2 + 1846 0.66 0.836219
Target:  5'- cGCCAauGGUagauuuGGCCAcGAGCauGCCGcCGCCGc -3'
miRNA:   3'- -CGGU--UCA------CCGGU-UUCG--CGGC-GUGGCc -5'
6994 5' -57.5 NC_001875.2 + 66237 0.66 0.836219
Target:  5'- aCCGGGUGaGCguuucgCAcuGCGCCGCcaACUGGg -3'
miRNA:   3'- cGGUUCAC-CG------GUuuCGCGGCG--UGGCC- -5'
6994 5' -57.5 NC_001875.2 + 104031 0.66 0.836219
Target:  5'- cGCCAAc-GGCCAA--UGCCGCAUCa- -3'
miRNA:   3'- -CGGUUcaCCGGUUucGCGGCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 74655 0.66 0.835397
Target:  5'- uGCCA--UGGCCGGGGCugggcgaGCUGCGCUu- -3'
miRNA:   3'- -CGGUucACCGGUUUCG-------CGGCGUGGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.