miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 3' -66.9 NC_001875.2 + 90360 0.66 0.438718
Target:  5'- gGCCGGCgcagaccacacaagaCAcgccgcGCGCGCCGCaaCCGGcGCc -3'
miRNA:   3'- -CGGCCG---------------GU------UGCGCGGCGcgGGCC-CGc -5'
7005 3' -66.9 NC_001875.2 + 70089 0.66 0.437877
Target:  5'- uCCGuGCCAACguuugaccccuuuGCGCCGCaGCCggccgacaacaaaauCGGGCc -3'
miRNA:   3'- cGGC-CGGUUG-------------CGCGGCG-CGG---------------GCCCGc -5'
7005 3' -66.9 NC_001875.2 + 113765 0.66 0.43536
Target:  5'- aGCC-GCCGuaAUGagGUCGCGCCCGaagcGGCGg -3'
miRNA:   3'- -CGGcCGGU--UGCg-CGGCGCGGGC----CCGC- -5'
7005 3' -66.9 NC_001875.2 + 17261 0.66 0.43536
Target:  5'- cGCCGcguuuGCCGACGCGCacaaucCGcCGCaCUGGaGCGu -3'
miRNA:   3'- -CGGC-----CGGUUGCGCG------GC-GCG-GGCC-CGC- -5'
7005 3' -66.9 NC_001875.2 + 124400 0.66 0.43536
Target:  5'- cGCCGcaaucGCCGGCGCGCaguUGCCCucgucguuGGGCc -3'
miRNA:   3'- -CGGC-----CGGUUGCGCGgc-GCGGG--------CCCGc -5'
7005 3' -66.9 NC_001875.2 + 62821 0.66 0.43536
Target:  5'- uGCUGGUCGgggcaGCGCGCCaccacgugcuuGCcCCCGcGGCa -3'
miRNA:   3'- -CGGCCGGU-----UGCGCGG-----------CGcGGGC-CCGc -5'
7005 3' -66.9 NC_001875.2 + 52201 0.66 0.43536
Target:  5'- uGCUGGgCGacuGCGCGCCGUGCaaaCUGGacGCGc -3'
miRNA:   3'- -CGGCCgGU---UGCGCGGCGCG---GGCC--CGC- -5'
7005 3' -66.9 NC_001875.2 + 62570 0.66 0.434523
Target:  5'- cGUCGGUguGCGUGugcauuaaccggcCCGUGCCguCGGGCa -3'
miRNA:   3'- -CGGCCGguUGCGC-------------GGCGCGG--GCCCGc -5'
7005 3' -66.9 NC_001875.2 + 71278 0.66 0.434523
Target:  5'- aGCUGGCCAugGauuucgaccaacuCGCCacGUGCCUGGcCGa -3'
miRNA:   3'- -CGGCCGGUugC-------------GCGG--CGCGGGCCcGC- -5'
7005 3' -66.9 NC_001875.2 + 74522 0.66 0.434523
Target:  5'- uGCCGcaacaauugcgucGCCGACGaCG-CGCGCCCGuucGCGu -3'
miRNA:   3'- -CGGC-------------CGGUUGC-GCgGCGCGGGCc--CGC- -5'
7005 3' -66.9 NC_001875.2 + 32784 0.66 0.434523
Target:  5'- cGCgCGGCgugGGCggGCGCCGCGCCgGcaagcucGGCGa -3'
miRNA:   3'- -CG-GCCGg--UUG--CGCGGCGCGGgC-------CCGC- -5'
7005 3' -66.9 NC_001875.2 + 102046 0.66 0.432852
Target:  5'- cGCC-GCCAGCGC-CCGCacaGUCCcgcacgaucauuugGGGCGa -3'
miRNA:   3'- -CGGcCGGUUGCGcGGCG---CGGG--------------CCCGC- -5'
7005 3' -66.9 NC_001875.2 + 3112 0.66 0.427031
Target:  5'- -gCGGCU--CGCGgCGCaGaCCUGGGCGg -3'
miRNA:   3'- cgGCCGGuuGCGCgGCG-C-GGGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 113158 0.66 0.427031
Target:  5'- cGCCGGCgcGCGCGCCGUuugauaugGCaaccaUGGGUu -3'
miRNA:   3'- -CGGCCGguUGCGCGGCG--------CGg----GCCCGc -5'
7005 3' -66.9 NC_001875.2 + 79125 0.66 0.427031
Target:  5'- uGUCGGCgGcGgGCGCCGCGgC-GGGCu -3'
miRNA:   3'- -CGGCCGgU-UgCGCGGCGCgGgCCCGc -5'
7005 3' -66.9 NC_001875.2 + 8452 0.66 0.427031
Target:  5'- -aCGGCCAaauGCGggugcuuggucaCGUCGCGCggaaacaccacgCCGGGCGc -3'
miRNA:   3'- cgGCCGGU---UGC------------GCGGCGCG------------GGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 62395 0.66 0.427031
Target:  5'- aGCgUGGCCGGCGCGCaaaCGCC--GGCGu -3'
miRNA:   3'- -CG-GCCGGUUGCGCGgc-GCGGgcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 43984 0.66 0.426203
Target:  5'- cGCCGaccGCCAcggacagcccgacGgGCGCCGUGCCCa-GCGu -3'
miRNA:   3'- -CGGC---CGGU-------------UgCGCGGCGCGGGccCGC- -5'
7005 3' -66.9 NC_001875.2 + 122037 0.66 0.421257
Target:  5'- uCCGGCCcaacguuacugugcACGCGCaGUGCCCGGaugugccGCGu -3'
miRNA:   3'- cGGCCGGu-------------UGCGCGgCGCGGGCC-------CGC- -5'
7005 3' -66.9 NC_001875.2 + 130117 0.66 0.418797
Target:  5'- cGgCGGCgCGACcgGUGUCGCGCCCGcaGCa -3'
miRNA:   3'- -CgGCCG-GUUG--CGCGGCGCGGGCc-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.