miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7006 3' -53.5 NC_001875.2 + 40368 0.66 0.969181
Target:  5'- uCUcCGGCGCCAggaaauCGGUGGAC---AUGCg -3'
miRNA:   3'- -GGcGCUGUGGU------GCCACCUGguuUACG- -5'
7006 3' -53.5 NC_001875.2 + 32840 0.66 0.969181
Target:  5'- gCGUGGCACCAaaaccUGGUGccguccGGCCAAAaGUa -3'
miRNA:   3'- gGCGCUGUGGU-----GCCAC------CUGGUUUaCG- -5'
7006 3' -53.5 NC_001875.2 + 131509 0.66 0.969181
Target:  5'- uCUGCGGCG-CGCGGUGcagcGGCUGGAaGCg -3'
miRNA:   3'- -GGCGCUGUgGUGCCAC----CUGGUUUaCG- -5'
7006 3' -53.5 NC_001875.2 + 62222 0.66 0.969181
Target:  5'- gCGCGACGauggaCAgGGUGGACgCGcgccGCg -3'
miRNA:   3'- gGCGCUGUg----GUgCCACCUG-GUuua-CG- -5'
7006 3' -53.5 NC_001875.2 + 55121 0.66 0.969181
Target:  5'- uCCGCGuCACCgACGcucagcGcGACCGAcgGCg -3'
miRNA:   3'- -GGCGCuGUGG-UGCca----C-CUGGUUuaCG- -5'
7006 3' -53.5 NC_001875.2 + 19866 0.66 0.969181
Target:  5'- gCCGCGuCGCgGCGcG-GGcGCCGuuUGCg -3'
miRNA:   3'- -GGCGCuGUGgUGC-CaCC-UGGUuuACG- -5'
7006 3' -53.5 NC_001875.2 + 31151 0.66 0.969181
Target:  5'- aCGCGcCGCgCGCGGagucGGACaguGUGCu -3'
miRNA:   3'- gGCGCuGUG-GUGCCa---CCUGguuUACG- -5'
7006 3' -53.5 NC_001875.2 + 46769 0.66 0.969181
Target:  5'- aCUGUugGACACCGCGaUGGACgAuuuuacGUGCc -3'
miRNA:   3'- -GGCG--CUGUGGUGCcACCUGgUu-----UACG- -5'
7006 3' -53.5 NC_001875.2 + 62115 0.66 0.968266
Target:  5'- gCGCGugGCCACGauguccuucaugucGcUGGACCAc--GCc -3'
miRNA:   3'- gGCGCugUGGUGC--------------C-ACCUGGUuuaCG- -5'
7006 3' -53.5 NC_001875.2 + 15095 0.66 0.966056
Target:  5'- gCUGCc-CGCCAUcaGGUGGGCCAGc-GCa -3'
miRNA:   3'- -GGCGcuGUGGUG--CCACCUGGUUuaCG- -5'
7006 3' -53.5 NC_001875.2 + 42301 0.66 0.966056
Target:  5'- cCCGCGGCGCCAa-GUacaGAUCGAGcGCg -3'
miRNA:   3'- -GGCGCUGUGGUgcCAc--CUGGUUUaCG- -5'
7006 3' -53.5 NC_001875.2 + 49449 0.66 0.966056
Target:  5'- gCGCGGC-UgACGGUGGACg----GCg -3'
miRNA:   3'- gGCGCUGuGgUGCCACCUGguuuaCG- -5'
7006 3' -53.5 NC_001875.2 + 12370 0.66 0.965732
Target:  5'- cCCGaCGACgaggguGCCACGGUgccgcucgucgucGGGCCGcuguuUGCc -3'
miRNA:   3'- -GGC-GCUG------UGGUGCCA-------------CCUGGUuu---ACG- -5'
7006 3' -53.5 NC_001875.2 + 47243 0.66 0.965732
Target:  5'- aCCGCGuguacagccucguGCACCAgCGGgucacGACCGAGgacGCg -3'
miRNA:   3'- -GGCGC-------------UGUGGU-GCCac---CUGGUUUa--CG- -5'
7006 3' -53.5 NC_001875.2 + 46986 0.66 0.965405
Target:  5'- gCCGCGaugagcGCACCACguuggaggagcugcuGGUGGAgcgcggcgacaacauCCAAAaguUGCa -3'
miRNA:   3'- -GGCGC------UGUGGUG---------------CCACCU---------------GGUUU---ACG- -5'
7006 3' -53.5 NC_001875.2 + 11564 0.66 0.962714
Target:  5'- aCGCGcCGCCgaaGCGG-GGAgCGGuGUGCg -3'
miRNA:   3'- gGCGCuGUGG---UGCCaCCUgGUU-UACG- -5'
7006 3' -53.5 NC_001875.2 + 9802 0.66 0.95915
Target:  5'- gCGCGuGCACaguaACGuUGGGCCGgaccAGUGCu -3'
miRNA:   3'- gGCGC-UGUGg---UGCcACCUGGU----UUACG- -5'
7006 3' -53.5 NC_001875.2 + 1404 0.66 0.95915
Target:  5'- -aGCGGCGCCcUGGUGuGCUAuuuuuagcGGUGCg -3'
miRNA:   3'- ggCGCUGUGGuGCCACcUGGU--------UUACG- -5'
7006 3' -53.5 NC_001875.2 + 49996 0.66 0.956903
Target:  5'- aCGCGGCGCUugucgcgguuggggcGCGcGUGGucGCCGGGcgGCg -3'
miRNA:   3'- gGCGCUGUGG---------------UGC-CACC--UGGUUUa-CG- -5'
7006 3' -53.5 NC_001875.2 + 108052 0.66 0.955358
Target:  5'- -aGCGACACguCGGcgaccUGGGCaacGUGCg -3'
miRNA:   3'- ggCGCUGUGguGCC-----ACCUGguuUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.