miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7007 5' -58 NC_001875.2 + 127279 0.66 0.823838
Target:  5'- gCGGCuGCuc-GCGUUGCuGGCgGCCcCCa -3'
miRNA:   3'- -GCCGuCGuuaCGCAGUG-CCG-CGGuGG- -5'
7007 5' -58 NC_001875.2 + 103118 0.66 0.823838
Target:  5'- uGGCucGCuugGCGgcgGCGGCGCCcuuCCa -3'
miRNA:   3'- gCCGu-CGuuaCGCag-UGCCGCGGu--GG- -5'
7007 5' -58 NC_001875.2 + 18214 0.66 0.823838
Target:  5'- gCGGCGccgucgccGCucuUGcCGcCGCGGCccGCCGCCg -3'
miRNA:   3'- -GCCGU--------CGuu-AC-GCaGUGCCG--CGGUGG- -5'
7007 5' -58 NC_001875.2 + 75287 0.66 0.823838
Target:  5'- uGGCgucGGCGAUgGCGUCGgcguuggugaUGGCGUCGgCg -3'
miRNA:   3'- gCCG---UCGUUA-CGCAGU----------GCCGCGGUgG- -5'
7007 5' -58 NC_001875.2 + 32968 0.66 0.823838
Target:  5'- aCGGC-GCcc-GCG-CACauuaGCGCCACCa -3'
miRNA:   3'- -GCCGuCGuuaCGCaGUGc---CGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 75437 0.66 0.823838
Target:  5'- uGGCgucGGCGAUgGCGUCGgcguuggugaUGGCGUCGgCg -3'
miRNA:   3'- gCCG---UCGUUA-CGCAGU----------GCCGCGGUgG- -5'
7007 5' -58 NC_001875.2 + 19118 0.66 0.823838
Target:  5'- uGuGCGcGCGAcGCGccuacCACGGCGgCGCCg -3'
miRNA:   3'- gC-CGU-CGUUaCGCa----GUGCCGCgGUGG- -5'
7007 5' -58 NC_001875.2 + 101644 0.66 0.823838
Target:  5'- aCGGCcGuCGcgGCGa-ACGGCGCCAa- -3'
miRNA:   3'- -GCCGuC-GUuaCGCagUGCCGCGGUgg -5'
7007 5' -58 NC_001875.2 + 75389 0.66 0.823838
Target:  5'- uGGCgucGGCGAUgGCGUCGgcguuggugaUGGCGUCGgCg -3'
miRNA:   3'- gCCG---UCGUUA-CGCAGU----------GCCGCGGUgG- -5'
7007 5' -58 NC_001875.2 + 91671 0.66 0.823838
Target:  5'- aCGGCAcgcccaugcGCAucGCGUUgccggccguGCGGUGCCAgCCc -3'
miRNA:   3'- -GCCGU---------CGUuaCGCAG---------UGCCGCGGU-GG- -5'
7007 5' -58 NC_001875.2 + 112675 0.66 0.822991
Target:  5'- cCGcGCGGaauggaGAUcuuuucuaaaaacGUGUCgcugACGGCGCCGCCg -3'
miRNA:   3'- -GC-CGUCg-----UUA-------------CGCAG----UGCCGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 39049 0.66 0.819587
Target:  5'- gCGGCGcuguaccGCAagcgcauggccauuGUGCGcCGCGGCGUCgugcuguGCCa -3'
miRNA:   3'- -GCCGU-------CGU--------------UACGCaGUGCCGCGG-------UGG- -5'
7007 5' -58 NC_001875.2 + 51553 0.66 0.818731
Target:  5'- aCGGCGcucGUcaAGUGCGagccguucacgacgCGCGGCGUgGCCa -3'
miRNA:   3'- -GCCGU---CG--UUACGCa-------------GUGCCGCGgUGG- -5'
7007 5' -58 NC_001875.2 + 70201 0.66 0.815293
Target:  5'- -aGCGGC---GUGUCGCGG-GCCACg -3'
miRNA:   3'- gcCGUCGuuaCGCAGUGCCgCGGUGg -5'
7007 5' -58 NC_001875.2 + 21256 0.66 0.815293
Target:  5'- uGGUccaGGCGc-GCG-CGCGGCGCgGCUa -3'
miRNA:   3'- gCCG---UCGUuaCGCaGUGCCGCGgUGG- -5'
7007 5' -58 NC_001875.2 + 81336 0.66 0.815293
Target:  5'- uCGuGCcGCGcgGCG-CGCuGGUGCCGCg -3'
miRNA:   3'- -GC-CGuCGUuaCGCaGUG-CCGCGGUGg -5'
7007 5' -58 NC_001875.2 + 70791 0.66 0.815293
Target:  5'- --uUAGCGGUGCGUCA--GCGCCGgCu -3'
miRNA:   3'- gccGUCGUUACGCAGUgcCGCGGUgG- -5'
7007 5' -58 NC_001875.2 + 98791 0.66 0.815293
Target:  5'- gCGGaacGCuAUcGCGcggCGCGGCGcCCGCCg -3'
miRNA:   3'- -GCCgu-CGuUA-CGCa--GUGCCGC-GGUGG- -5'
7007 5' -58 NC_001875.2 + 10463 0.66 0.815293
Target:  5'- gCGGCGGC---GCGcUCAgugaaUGGCGCUugCu -3'
miRNA:   3'- -GCCGUCGuuaCGC-AGU-----GCCGCGGugG- -5'
7007 5' -58 NC_001875.2 + 52705 0.66 0.815293
Target:  5'- uGGCAaaCGAgccCGcCGCGGCGcCCGCCg -3'
miRNA:   3'- gCCGUc-GUUac-GCaGUGCCGC-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.