miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 5' -60.6 NC_001875.2 + 90383 0.66 0.728485
Target:  5'- aCGCCGCG-CGCGccgcaaCCGGcGcCUgUGCGCg -3'
miRNA:   3'- -GCGGCGCuGCGCc-----GGCU-CaGA-ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 70334 0.66 0.728485
Target:  5'- aGCaCGCGGacUGCGgcGCCGAGcCggcGCGCa -3'
miRNA:   3'- gCG-GCGCU--GCGC--CGGCUCaGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 40647 0.66 0.728485
Target:  5'- gGgCGCGcACGC-GCCGGcUgUUGCGCg -3'
miRNA:   3'- gCgGCGC-UGCGcCGGCUcAgAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 62400 0.66 0.728485
Target:  5'- uCGCCGCGgguuuuauuGCGUGGgCaAGcgUUUGCGCu -3'
miRNA:   3'- -GCGGCGC---------UGCGCCgGcUCa-GAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 113401 0.66 0.718903
Target:  5'- uCGCgCGCcACGCGGaCCGcGcCUcGCGCc -3'
miRNA:   3'- -GCG-GCGcUGCGCC-GGCuCaGAaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 37058 0.66 0.718903
Target:  5'- aCGCgCGCgGACGCGGCCacgcuguGUUUgGCGg -3'
miRNA:   3'- -GCG-GCG-CUGCGCCGGcu-----CAGAaCGCg -5'
7008 5' -60.6 NC_001875.2 + 79137 0.66 0.718903
Target:  5'- gCGCCGCGGCG-GGCUc-GUUUgccacgGCGUg -3'
miRNA:   3'- -GCGGCGCUGCgCCGGcuCAGAa-----CGCG- -5'
7008 5' -60.6 NC_001875.2 + 40071 0.66 0.718903
Target:  5'- aCGCCGCacuacGACGaGGCCGcGgcgCUgacGCGCc -3'
miRNA:   3'- -GCGGCG-----CUGCgCCGGCuCa--GAa--CGCG- -5'
7008 5' -60.6 NC_001875.2 + 31916 0.66 0.718903
Target:  5'- gGCCGCGcugcaccgcGCGCgGGCCcgcUCgUUGCGCu -3'
miRNA:   3'- gCGGCGC---------UGCG-CCGGcucAG-AACGCG- -5'
7008 5' -60.6 NC_001875.2 + 93066 0.66 0.718903
Target:  5'- gGCC-C-AUGCGGUgGAugcgGUCUUGCGCc -3'
miRNA:   3'- gCGGcGcUGCGCCGgCU----CAGAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 35648 0.66 0.718903
Target:  5'- gCGCaGCGcaaguGCGCGGCCaucAGgcaCUUGUGCg -3'
miRNA:   3'- -GCGgCGC-----UGCGCCGGc--UCa--GAACGCG- -5'
7008 5' -60.6 NC_001875.2 + 84340 0.66 0.718903
Target:  5'- aGCgGCGA-GUGGCgGAG-CggcUGCGCc -3'
miRNA:   3'- gCGgCGCUgCGCCGgCUCaGa--ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 33241 0.66 0.718903
Target:  5'- gCGCCGUuucGGCGCGGCgcucCGAGU--UGCa- -3'
miRNA:   3'- -GCGGCG---CUGCGCCG----GCUCAgaACGcg -5'
7008 5' -60.6 NC_001875.2 + 27628 0.66 0.718903
Target:  5'- -aCCGCGugGUuuaGGCCGuGGUUc-GCGCa -3'
miRNA:   3'- gcGGCGCugCG---CCGGC-UCAGaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 131791 0.66 0.718903
Target:  5'- uCGCCGC--CGCcGCCGAGUUgagcaccaacUGCGUg -3'
miRNA:   3'- -GCGGCGcuGCGcCGGCUCAGa---------ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 59901 0.66 0.718903
Target:  5'- gGCUGCG-CGCGGagcgCGcGGUCaagGCGCu -3'
miRNA:   3'- gCGGCGCuGCGCCg---GC-UCAGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 91888 0.66 0.717941
Target:  5'- uGCgGCGGCG-GGUCGGG-CaaccgcgcgcaaaUUGCGCg -3'
miRNA:   3'- gCGgCGCUGCgCCGGCUCaG-------------AACGCG- -5'
7008 5' -60.6 NC_001875.2 + 21066 0.66 0.71312
Target:  5'- gGCgGCGuuuugggcaaaagacGCGCGGCgGcGGUCgccGCGCu -3'
miRNA:   3'- gCGgCGC---------------UGCGCCGgC-UCAGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 10403 0.66 0.71312
Target:  5'- gCGCCGUGGCGCGGCacccgCUgcacuacccaacauuUGgCGCa -3'
miRNA:   3'- -GCGGCGCUGCGCCGgcucaGA---------------AC-GCG- -5'
7008 5' -60.6 NC_001875.2 + 82388 0.66 0.709251
Target:  5'- aCGCgGCGAcCGUcGCUGAGUCgcugagcuacaUGUGCa -3'
miRNA:   3'- -GCGgCGCU-GCGcCGGCUCAGa----------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.