Results 1 - 20 of 141 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 8083 | 0.66 | 0.850626 |
Target: 5'- -cGCGUUgUUGUCgCGaCGGCCGUACCGa -3' miRNA: 3'- caUGCAA-AGCGG-GUcGUCGGCGUGGC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 3173 | 0.66 | 0.850626 |
Target: 5'- aGUAgGUga-G-CCGGCGGCCGCGCa- -3' miRNA: 3'- -CAUgCAaagCgGGUCGUCGGCGUGgc -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 113684 | 0.66 | 0.850626 |
Target: 5'- -gGCGgcgUCGCgC-GC-GCCGCACCa -3' miRNA: 3'- caUGCaa-AGCGgGuCGuCGGCGUGGc -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 87295 | 0.66 | 0.850626 |
Target: 5'- -aAUGca--GCCCGGCAcGCCGCGCg- -3' miRNA: 3'- caUGCaaagCGGGUCGU-CGGCGUGgc -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 3014 | 0.66 | 0.850626 |
Target: 5'- aGUGCGcgUCGCCguGCAaGuuGUACaCGc -3' miRNA: 3'- -CAUGCaaAGCGGguCGU-CggCGUG-GC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 9693 | 0.66 | 0.842584 |
Target: 5'- cGUugGggcUCGCCgucguGCgcgccGGCCGCGCCGc -3' miRNA: 3'- -CAugCaa-AGCGGgu---CG-----UCGGCGUGGC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 109910 | 0.66 | 0.842584 |
Target: 5'- -aACGUUUaaCGCCCcgcuuAGCcauGCaCGCGCCGc -3' miRNA: 3'- caUGCAAA--GCGGG-----UCGu--CG-GCGUGGC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 52510 | 0.66 | 0.842584 |
Target: 5'- -aGCGg--CGCCaaaGGCAgcGCCGCGCUc -3' miRNA: 3'- caUGCaaaGCGGg--UCGU--CGGCGUGGc -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 26487 | 0.66 | 0.842584 |
Target: 5'- cGUAguUUUCGCaauaGGCGGCCGCGuuGa -3' miRNA: 3'- -CAUgcAAAGCGgg--UCGUCGGCGUggC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 31590 | 0.66 | 0.842584 |
Target: 5'- -aGgGUggUGUCCGGC-GCCGUGCCGu -3' miRNA: 3'- caUgCAaaGCGGGUCGuCGGCGUGGC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 40192 | 0.66 | 0.842584 |
Target: 5'- cGUACGcgUaCGgCCAGCuGCUGCGCgGc -3' miRNA: 3'- -CAUGCaaA-GCgGGUCGuCGGCGUGgC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 113712 | 0.66 | 0.842584 |
Target: 5'- -gAUGgugUCGCCCAGCacaaAGCCGaugagcgacuccCACCa -3' miRNA: 3'- caUGCaa-AGCGGGUCG----UCGGC------------GUGGc -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 88235 | 0.66 | 0.842584 |
Target: 5'- -aACGg--CGCa-AGCGGCgCGCGCCGc -3' miRNA: 3'- caUGCaaaGCGggUCGUCG-GCGUGGC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 39085 | 0.66 | 0.841769 |
Target: 5'- -gGCGUUUacgaauaCGCCaacgcGCuGCUGCACCGg -3' miRNA: 3'- caUGCAAA-------GCGGgu---CGuCGGCGUGGC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 103630 | 0.66 | 0.840133 |
Target: 5'- -gGCGUUcgucUCGCCCAGUAuGUUgaugaucagaaacgGCACCGc -3' miRNA: 3'- caUGCAA----AGCGGGUCGU-CGG--------------CGUGGC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 34329 | 0.66 | 0.834348 |
Target: 5'- ----aUUUCGCCCGGCGGCUcuaugagcgGCACa- -3' miRNA: 3'- caugcAAAGCGGGUCGUCGG---------CGUGgc -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 37881 | 0.66 | 0.834348 |
Target: 5'- -gGCGggcCGCgCCAGCGGCUugcuggcgcgGCACUGg -3' miRNA: 3'- caUGCaaaGCG-GGUCGUCGG----------CGUGGC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 57181 | 0.66 | 0.834348 |
Target: 5'- -aGCGcagcUCGCCCAGCcccggccauGGCaCGCuGCCGa -3' miRNA: 3'- caUGCaa--AGCGGGUCG---------UCG-GCG-UGGC- -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 72730 | 0.66 | 0.834348 |
Target: 5'- uUGCGcgUCGgCCAGCGacGCCGUcaGCCu -3' miRNA: 3'- cAUGCaaAGCgGGUCGU--CGGCG--UGGc -5' |
|||||||
7009 | 3' | -57.1 | NC_001875.2 | + | 94604 | 0.66 | 0.834348 |
Target: 5'- aUACGgcggUUCGCUgagcugCAGCGGCgGCACa- -3' miRNA: 3'- cAUGCa---AAGCGG------GUCGUCGgCGUGgc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home