miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7014 5' -57.6 NC_001875.2 + 102566 0.65 0.841114
Target:  5'- gACCGCgccccgccgGCGCGgucgGCgGCCGCGCa -3'
miRNA:   3'- gUGGUGaaaca----CGCGC----UG-CGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 53501 0.66 0.836219
Target:  5'- gCGCUcaaggACUcgGUGCGCGuguuuuuggcgcACGUCGUGCGc -3'
miRNA:   3'- -GUGG-----UGAaaCACGCGC------------UGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 75069 0.66 0.836219
Target:  5'- --aUACUUUG-GCGUgGACGCCaacaaGCGCGa -3'
miRNA:   3'- gugGUGAAACaCGCG-CUGCGG-----CGCGC- -5'
7014 5' -57.6 NC_001875.2 + 7015 0.66 0.836219
Target:  5'- gCGCCAgUUgcUGgacguaaGCGagGugGCCGCGCGc -3'
miRNA:   3'- -GUGGUgAA--ACa------CGCg-CugCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 102308 0.66 0.836219
Target:  5'- gCGCCGCaagaagGCGCaGACaugaaaaacaaaGCCGCGCGu -3'
miRNA:   3'- -GUGGUGaaaca-CGCG-CUG------------CGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 54948 0.66 0.836219
Target:  5'- cCGCCcCUUUGcGCGCGcguuUGCCGgaCGCGu -3'
miRNA:   3'- -GUGGuGAAACaCGCGCu---GCGGC--GCGC- -5'
7014 5' -57.6 NC_001875.2 + 44531 0.66 0.836219
Target:  5'- gGCCACcaUG-GCGUaaucgacguugGGCaGCCGCGCGu -3'
miRNA:   3'- gUGGUGaaACaCGCG-----------CUG-CGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 83091 0.66 0.828754
Target:  5'- cCACCACgucguacgugcuacUGUGC-UGGC-CCGCGCGg -3'
miRNA:   3'- -GUGGUGaa------------ACACGcGCUGcGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 17486 0.66 0.827916
Target:  5'- gGCCAgcaagUUG-GCG-GACGCCGCGUc -3'
miRNA:   3'- gUGGUga---AACaCGCgCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 33465 0.66 0.827916
Target:  5'- gGCCAgUggucgaaaGUG-GCG-CGCCGCGCGc -3'
miRNA:   3'- gUGGUgAaa------CACgCGCuGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 9365 0.66 0.827916
Target:  5'- gCAUCGCaaaggUGcUGCGCG-CGCCGCaGCc -3'
miRNA:   3'- -GUGGUGaa---AC-ACGCGCuGCGGCG-CGc -5'
7014 5' -57.6 NC_001875.2 + 89360 0.66 0.827916
Target:  5'- gACgGCgugcgcGUGCGCGuguUGCUGCGUGg -3'
miRNA:   3'- gUGgUGaaa---CACGCGCu--GCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 86621 0.66 0.827916
Target:  5'- cCGCCugUUcGcGCGCGACGUguaCGCcaGCGa -3'
miRNA:   3'- -GUGGugAAaCaCGCGCUGCG---GCG--CGC- -5'
7014 5' -57.6 NC_001875.2 + 91610 0.66 0.827916
Target:  5'- aCACCcgGCUcuugggcaauUUGcUGCGcCGAauaGCCGCGCa -3'
miRNA:   3'- -GUGG--UGA----------AAC-ACGC-GCUg--CGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 66024 0.66 0.827916
Target:  5'- aGCaGCUgcaaGCGCuuGGCGCCGCGCa -3'
miRNA:   3'- gUGgUGAaacaCGCG--CUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 41319 0.66 0.827916
Target:  5'- gGCCGUUUUGaccaaCGCGuACGCCGUGCa -3'
miRNA:   3'- gUGGUGAAACac---GCGC-UGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 110063 0.66 0.827916
Target:  5'- aACCcg--UGUcGCGCgcagaGACGCUGCGCGu -3'
miRNA:   3'- gUGGugaaACA-CGCG-----CUGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 78410 0.66 0.827916
Target:  5'- gCACgCGCUggccGUGUGCG-CGCUGgGCa -3'
miRNA:   3'- -GUG-GUGAaa--CACGCGCuGCGGCgCGc -5'
7014 5' -57.6 NC_001875.2 + 48840 0.66 0.827076
Target:  5'- gCGCCGCUUcaaGCccgccggcgacgaGCGGCGCCGCGa- -3'
miRNA:   3'- -GUGGUGAAacaCG-------------CGCUGCGGCGCgc -5'
7014 5' -57.6 NC_001875.2 + 25921 0.66 0.819436
Target:  5'- gGCCAaugcccgaguUUUUcGUG-GUGGCGCCGCGCc -3'
miRNA:   3'- gUGGU----------GAAA-CACgCGCUGCGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.