miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 5' -54.1 NC_001875.2 + 39669 0.66 0.920344
Target:  5'- -gCCGGC-GGCGCGcGGCGGCG-AGCu -3'
miRNA:   3'- uaGGUUGuUCGCGU-UUGCCGCgUCGu -5'
7015 5' -54.1 NC_001875.2 + 125341 0.66 0.920344
Target:  5'- --gCGGCcAGCGUgu-UGGCGCGGCAc -3'
miRNA:   3'- uagGUUGuUCGCGuuuGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 84657 0.66 0.920344
Target:  5'- cUCCAGC-AGCGCcuuGCauucGUGCAGCGu -3'
miRNA:   3'- uAGGUUGuUCGCGuu-UGc---CGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 121367 0.66 0.920344
Target:  5'- cGUUCAGCAAGCGCcauucacuGAGCGcGcCGCcGCGc -3'
miRNA:   3'- -UAGGUUGUUCGCG--------UUUGC-C-GCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 49341 0.66 0.920344
Target:  5'- uUCCuGC-AGCGUggGCGGCG-GGCc -3'
miRNA:   3'- uAGGuUGuUCGCGuuUGCCGCgUCGu -5'
7015 5' -54.1 NC_001875.2 + 20011 0.66 0.919757
Target:  5'- -gCCGGCucGCGCAGccgucacGCGGaGCAGCc -3'
miRNA:   3'- uaGGUUGuuCGCGUU-------UGCCgCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 128164 0.66 0.918574
Target:  5'- --aCGAUAAaaucuuugguuggcGCGCAAGC-GCGCAGCAc -3'
miRNA:   3'- uagGUUGUU--------------CGCGUUUGcCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 18193 0.66 0.914353
Target:  5'- -gCCGGCGGGCGUA---GGCGUGGUg -3'
miRNA:   3'- uaGGUUGUUCGCGUuugCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 62632 0.66 0.914353
Target:  5'- -cCCgAACAAGCGUAcuggccguCGGCGCcGCGc -3'
miRNA:   3'- uaGG-UUGUUCGCGUuu------GCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 89327 0.66 0.914353
Target:  5'- --aCGACGGGCcucaGCuuuGCGGCGCAcGCGg -3'
miRNA:   3'- uagGUUGUUCG----CGuu-UGCCGCGU-CGU- -5'
7015 5' -54.1 NC_001875.2 + 66114 0.66 0.914353
Target:  5'- --gCGGCGGGCgGCGAgGCGGCGCcGCc -3'
miRNA:   3'- uagGUUGUUCG-CGUU-UGCCGCGuCGu -5'
7015 5' -54.1 NC_001875.2 + 41705 0.66 0.914353
Target:  5'- -gCCAG--GGCGUAugcGCGGCGCuGCGc -3'
miRNA:   3'- uaGGUUguUCGCGUu--UGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 34401 0.66 0.914353
Target:  5'- uUCCucauGCAAGUGgAaaacGACGGCGCGuugcGCAa -3'
miRNA:   3'- uAGGu---UGUUCGCgU----UUGCCGCGU----CGU- -5'
7015 5' -54.1 NC_001875.2 + 117925 0.66 0.914353
Target:  5'- --aCGGCAAGCuGCAGGcCGGCGUGcGCGc -3'
miRNA:   3'- uagGUUGUUCG-CGUUU-GCCGCGU-CGU- -5'
7015 5' -54.1 NC_001875.2 + 84364 0.66 0.914353
Target:  5'- -gCCggUAGGUGCGcggccugccggGGCGGCGuCGGUAg -3'
miRNA:   3'- uaGGuuGUUCGCGU-----------UUGCCGC-GUCGU- -5'
7015 5' -54.1 NC_001875.2 + 113627 0.66 0.914353
Target:  5'- --gCGGCAAGaGCGgcGACGGCGCcGCGu -3'
miRNA:   3'- uagGUUGUUCgCGU--UUGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 125631 0.66 0.914353
Target:  5'- -gCCGACGGacgcaauugcGCGCuuugAAACGGCGCgcgGGCAc -3'
miRNA:   3'- uaGGUUGUU----------CGCG----UUUGCCGCG---UCGU- -5'
7015 5' -54.1 NC_001875.2 + 131381 0.66 0.91374
Target:  5'- -gCCuguGCAAGCGCGAAcacucgcCGGUGCacgacGGCAc -3'
miRNA:   3'- uaGGu--UGUUCGCGUUU-------GCCGCG-----UCGU- -5'
7015 5' -54.1 NC_001875.2 + 98893 0.66 0.908103
Target:  5'- --gCGACAuG-GCGAGCGGCGC-GCAa -3'
miRNA:   3'- uagGUUGUuCgCGUUUGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 14440 0.66 0.908103
Target:  5'- --aCAACAAGCugGCAAagaagcccGCGGC-CAGCAa -3'
miRNA:   3'- uagGUUGUUCG--CGUU--------UGCCGcGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.